3HAD100

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0)

3HAD120

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:0)

3HAD121

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:1)

3HAD140

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:0)

3HAD141

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:1)

3HAD160

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:0)

3HAD161

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:1)

3HAD180

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:0)

3HAD181

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:1)

3HAD40

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C4:0)

3HAD60

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C6:0)

3HAD80

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)

3PEPTabcpp

Tripeptide (LalaDgluMdap) transport via ABC system (periplasm)

4HBCOAH

4-hydroxybutanoyl-CoA dehydratase

4HBZR

4-hydroxybenzoylCoA reducatse

4PCP

Tetrapeptide L,D-carboxypeptidase

4PEPTabcpp

Tetrapeptide (LalaDgluMdapDala) transport via ABC system (periplasm)

5DOAN

5'-deoxyadenosine nuclosidase

5HBZIDMT

5-hydroxybenzimidazole methyltransferase

ACAFDOR

Acetaldehyde:ferredoxin oxidoreductase

ACNPLYS

N-Acetylneuraminate pyruvate-lyase

ACONTa

Aconitase (half-reaction A, Citrate hydro-lyase)

ACONTb

Aconitase (half-reaction B, Isocitrate hydro-lyase)

ACPS

Acyl Carrier Protein Synthase

ADCYRS

Adenosylcobyric acid synthase (glutamine-hydrolysing)

ADD

Adenine deaminase

ADPRDP

ADPribose diphosphatase

AGM3PA

N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase

AGM3PH

N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide beta -1,4-N-acetylglucosaminidase

AGM4PA

N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase

AGM4PCP

N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase

AGM4PH

N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide beta -1,4-N-acetylglucosaminidase

AGMDA

Agmatine deaminase

AGMH

N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl beta -1,4-N-acetylglucosaminidase

AHCi

Adenosylhomocysteinase

ALAALAabcpp

D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm)

ALAALAD

D-alanine-D-alanine dipeptidase

ALAD_L

L-alanine dehydrogenase

ALDD2x

Aldehyde dehydrogenase (acetaldehyde, NAD)

AM3PA

Anhydrous-N-Acetylmuramyl-tripeptide amidase

AM4PA

Anhydrous-N-Acetylmuramyl-tetrapeptide amidase

AM4PCP

Anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase

AMPMS2

4-amino-2-methyl-5-phosphomethylpyrimidine synthetase

ANHMK

1,6-anhydrous-N-Acetylmuramate kinase

APH120

Acylphosphatase (C12:0)

APH140

Acylphosphatase (C14:0)

APH141

Acylphosphatase (C14:1)

APH160

Acylphosphatase (C16:0)

APH161

Acylphosphatase (C16:1)

APH180

Acylphosphatase (C18:0)

APH181

Acylphosphatase (C18:1)

ASNS1

Asparagine synthase (glutamine-hydrolysing)

ASR2

Arsenate reductase (thioredoxin)

ATPM

ATP maintenance requirement

ATPS10rpp

ATP synthase (10 protons for 3 ATP) (periplasm)

BIOMASS_Gm_GS15_core_79p20M

Geobacter metallireducens biomass objective function (iAF987) - core - with 79.20 GAM estimate

BIOMASS_Gm_GS15_WT_79p20M

Geobacter metallireducens biomass objective function (iAF987) - WT - with 79.20 GAM estimate

BPNT

3',5'-bisphosphate nucleotidase

BUTAFDOR

Butyraldehyde:ferredoxin oxidoreductase

BUTSO3abcpp

Butanesulfonate transport via ABC system (periplasm)

BZDH

Benzaldehyde dehydrogenase

CA2abc1pp

Calcium transport via ABC system (periplasm)

CA2abcpp

Calcium transport via ABC system (periplasm)

CAMPP

3',5'-cyclic adenylate-2'-phosphate 2'-phosphatase

CBPAH

N-carbamoylputrescine amidohydrolase

CBPS

Carbamoyl-phosphate synthase (glutamine-hydrolysing)

CCGS

7-cyano-7-carbaguanine synthase

CDGUNPD

3,5-cyclic-nucleotide phosphodiesterase

CHDCCH

Cyclohexa-1,5-dienecarbonyl-CoA hydro-lyase

CITCIa

Citramalate dehydratase

CITCIb

3-methylmalate hydratase

CITMS

Citramalate synthase

CMPDAi

CMP deaminase

Cobalt2abcppI

Cobalt II transport via ABC system periplasm I

CODH4

Carbon monoxide dehydrogenase / acetyl-CoA synthase 2

CPC5MT

Precorrin-5 C1-methyltransferase

CPH4S

6-carboxy-5,6,7,8-tetrahydropterin synthase

CPMPS

Cyclic pyranopterin monophosphate synthase

CRO4abcpp

Chromate transport via ABC system (periplasm)

CS

Citrate synthase

CSND

Cytosine deaminase

CSPMDDH

Carboxyspermidine dehydrogenase

CTPS2

CTP synthase (glutamine)

CU2abcpp

Copper (Cu+2) ABC transporter (periplasm)

CUabcpp

Copper transport via ABC system (periplasm)

CYOO2pp

Cytochrome-c oxidase (2 protons translocated) periplasm

CYRDAS

Cob(II)yrinate a,c-diamide synthase (glutamine-hydrolysing)

CYSTL

Cystathionine b-lyase

CYTBD2pp

Cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm)

DCMPDA

DCMP deaminase

DDPA

3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase

DHAD1

Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)

DHAD2

Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)

DHDPS

Dihydrodipicolinate synthase

DHORTS

Dihydroorotase

DHPPDA2

Diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp)

DHQTi

3-dehydroquinate dehydratase, irreversible

DMPPS

1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)

DNMPPA

Dihydroneopterin monophosphate dephosphorylase

DNTPPA

Dihydroneopterin triphosphate pyrophosphatase

DUTPDP

DUTP diphosphatase

E4PD

Erythrose 4-phosphate dehydrogenase

ECOAH1

3-hydroxyacyl-CoA dehydratase (3-hydroxybutanoyl-CoA)

ECOAH2

3-hydroxyacyl-CoA dehydratase (3-hydroxyhexanoyl-CoA)

ECOAH3

3-hydroxyacyl-CoA dehydratase (3-hydroxyoctanoyl-CoA)

ECOAH4

3-hydroxyacyl-CoA dehydratase (3-hydroxydecanoyl-CoA)

ECOAH5

3-hydroxyacyl-CoA dehydratase (3-hydroxydodecanoyl-CoA)

ECOAH6

3-hydroxyacyl-CoA dehydratase (3-hydroxytetradecanoyl-CoA)

ECOAH7

3-hydroxyacyl-CoA dehydratase (3-hydroxyhexadecanoyl-CoA)

ECOAH8

3-hydroxyacyl-CoA dehydratase (3-hydroxyoctadecanoyl-CoA)

ENO

Enolase

ETHSO3abcpp

Ethanesulfonate transport via ABC system (periplasm)

FA100ACPHi

Fatty-acyl-ACP hydrolase

FA120ACPHi

Fatty-acyl-ACP hydrolase

FA140ACPHi

Fatty-acyl-ACP hydrolase

FA141ACPHi

Fatty-acyl-ACP hydrolase

FA160ACPHi

Fatty-acyl-ACP hydrolase

FA161ACPHi

Fatty-acyl-ACP hydrolase

FA80ACPHi

Fatty-acyl-ACP hydrolase

FACOAE140

Fatty-acid-CoA thioesterase (tetradecanoate)

FACOAE160

Fatty-acid-CoA thioesterase (hexadecanoate)

FACOAE161

Fatty-acid-CoA thioesterase (hexadecenoate)

FBP

Fructose-bisphosphatase

FE2Gabcpp

Iron (II) transport via ABC system (GTP) (periplasm)

FE3Gabcpp

Iron (III) transport via ABC system (GTP) (periplasm)

FESD1s

Iron-sulfur cluster damage (peroxide, spontaneous)

FESD2s

Iron-sulfur cluster damage (nitrous oxide, spontaneous)

FUM

Fumarase

FUTH

Futalosine hydrolase

G5SADs

L-glutamate 5-semialdehyde dehydratase (spontaneous)

GCALDD

Glycolaldehyde dehydrogenase

GDPTPDP

Guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase

GHMT2r

Glycine hydroxymethyltransferase, reversible

GLUDy

Glutamate dehydrogenase (NADP)

GLUPRT

Glutamine phosphoribosyldiphosphate amidotransferase

GM1LIPAabcpp

Geobacter metallireucens modelified lipid A transport via ABC system (periplasm)

GM1LIPAabctex

G. metallireducens core lipid A transport via ABC system (periplasm to extracellular)

GM2LIPAabcpp

Geobacter metallireucens modelified lipid A transport via ABC system (periplasm)

GM2LIPAabctex

G. metallireducens core lipid A transport via ABC system (periplasm to extracellular)

GMAND

GDP-D-mannose dehydratase

GMHEPPA

D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase

GMPS2

GMP synthase

GTPCI

GTP cyclohydrolase I

GTPCII2

GTP cyclohydrolase II (25drapp)

H2Otpp

H2O transport via diffusion (periplasm)

HCITS

Homocitrate synthase

HCO3E

HCO3 equilibration reaction

HEMEOS

Heme O synthase

HISTD

Histidinol dehydrogenase

HISTP

Histidinol-phosphatase

HKtpp

H+/K+ gastric/non-gastric P-ATPase and ABC ATPase (periplasm)

HMBS

Hydroxymethylbilane synthase

HP5CD

3-hydroxy-1-pyrroline-5-carboxylate dehydrogenase

IGPDH

Imidazoleglycerol-phosphate dehydratase

IGPS

Indole-3-glycerol-phosphate synthase

ILEabcpp

L-isoleucine transport via ABC system (periplasm)

IMPC

IMP cyclohydrolase

IMPD

IMP dehydrogenase

IPDPS

1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)

IPPMIa

3-isopropylmalate dehydratase

IPPMIb

2-isopropylmalate hydratase

IPPS

2-isopropylmalate synthase

ISETACabcpp

Isethionate transport via ABC system (periplasm)

K2L4Aabcpp

KDO(2)-lipid IV A transport via ABC system (periplasm)

K2L4Aabctex

KDO(2)-lipid IV A transport via ABC system (periplasm to extracellular)

KDOPP

3-deoxy-manno-octulosonate-8-phosphatase

KDOPS

3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase

LADGMDH

L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase

LALGP

L-alanyl-gamma-L-glutamate peptidase

LCD

Lactoyl coA dehydratase

LCYSTabcpp

L-cysteate transport via ABC system (periplasm)

LDAPAT

LL-diaminopimelate aminotransferase

LDGUNPD

Linear diguanylate phosphodiesterase

LEUabcpp

L-leucine transport via ABC system (periplasm)

LIPAabcpp

Lipid A transport via ABC system (periplasm)

LIPAabctex

Lipid A transport via ABC system (periplasm to extracellular)

MCITD

2-methylcitrate dehydratase

MCITS

2-methylcitrate synthase

MCSNAH

5-Methylcytosine aminohydrolase

MECDPDH4

2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase

METAT

Methionine adenosyltransferase

METOX1s

Methionine oxidation (spontaneous)

METOX2s

Methionine oxidation 2 (spontaneous)

METSOXR1

L-methionine-S-oxide reductase

METSOXR2

L-methionine-R-sulfoxide reductase

MG2uabcpp

Magnesium (Mg+2) ABC transporter (ubtake, periplasm)

MGCH

Methylglutaconyl-CoA hydratase

MICITDr

2-methylisocitrate dehydratase

MNabc_1

Manganese Mn2 transport via ABC system periplasm

MOBDabcpp

Molybdate transport via ABC system (periplasm)

MOCOS

Molybdenum cofactor synthase

MOHMT

3-methyl-2-oxobutanoate hydroxymethyltransferase

MOTH1

Maltooligosyltrehalose trehalohydrolase (maltosyltrehalose)

MOTH2

Maltooligosyltrehalose trehalohydrolase (maltotriosyltrehalose)

MOTH3

Maltooligosyltrehalose trehalohydrolase (maltotetraosyltrehalose)

MOTH4

Maltooligosyltrehalose trehalohydrolase (maltopentaosyltrehalose)

MSO3abcpp

Methanesulfonate transport via ABC system (periplasm)

MTHFC

Methenyltetrahydrofolate cyclohydrolase

N2OR

Nitrous oxide reductase (nadh)

NAMNPP

Nicotinic acid mononucleotide pyrophosphorylase

NI2uabcpp

Nickel transport via ABC system (uptake, periplasm)

NIT1b

Nitrogenase

NNAM

Nicotinamidase

NO3R2pp

Nitrate reductase (Menaquinol-8) (periplasm)

NO3R3pp

Nitrate reductase (Cytochrome c) periplasmic

NORRDX

Nitric oxide reductase (rubredoxin)

NTPP1

Nucleoside triphosphate pyrophosphorylase (dgtp)

NTPP10

Nucleoside triphosphate pyrophosphorylase (ditp)

NTPP11

Nucleoside triphosphate pyrophosphorylase (xtp)

NTPP2

Nucleoside triphosphate pyrophosphorylase (gtp)

NTPP3

Nucleoside triphosphate pyrophosphorylase (dctp)

NTPP4

Nucleoside triphosphate pyrophosphorylase (ctp)

NTPP5

Nucleoside triphosphate pyrophosphorylase (datp)

NTPP6

Nucleoside triphosphate pyrophosphorylase (atp)

NTPP7

Nucleoside triphosphate pyrophosphorylase (dttp)

NTPP8

Nucleoside triphosphate pyrophosphorylase (utp)

NTPTP1

Nucleoside triphosphate tripolyhydrolase

OCHCCH

6-oxo-cyclohex-1-ene-carbonyl-CoA hydrolase

OGMEACPD

3-Oxo-glutaryl-[ACP] methyl ester dehydratase

OPMEACPD

3-Oxo-pimeloyl-[ACP] methyl ester dehydratase

P5CD

1-pyrroline-5-carboxylate dehydrogenase

PA120abcpp

Phosphatidate transport via ABC system (n-C12:0, periplasm)

PA140abcpp

Phosphatidate transport via ABC system (n-C14:0, periplasm)

PA141abcpp

Phosphatidate transport via ABC system (n-C14:1, periplasm)

PA160abcpp

Phosphatidate transport via ABC system (n-C16:0, periplasm)

PA161abcpp

Phosphatidate transport via ABC system (n-C16:1, periplasm)

PA180abcpp

Phosphatidate transport via ABC system (n-C18:0, periplasm)

PA181abcpp

Phosphatidate transport via ABC system (n-C18:1, periplasm)

PDE1

3',5'-cyclic-nucleotide phosphodiesterase

PDX5PS

Pyridoxine 5'-phosphate synthase

PE120abcpp

Phosphatidylethanolamine transport via ABC system (n-C12:0, periplasm)

PE140abcpp

Phosphatidylethanolamine transport via ABC system (n-C14:0, periplasm)

PE141abcpp

Phosphatidylethanolamine transport via ABC system (n-C14:1, periplasm)

PE160abcpp

Phosphatidylethanolamine transport via ABC system (n-C16:0, periplasm)

PE161abcpp

Phosphatidylethanolamine transport via ABC system (n-C16:1, periplasm)

PE180abcpp

Phosphatidylethanolamine transport via ABC system (n-C18:0, periplasm)

PE181abcpp

Phosphatidylethanolamine transport via ABC system (n-C18:1, periplasm)

PG120abcpp

Phosphatidylglycerol transport via ABC system (n-C12:0, periplasm)

PG140abcpp

Phosphatidylglycerol transport via ABC system (n-C14:0, periplasm)

PG141abcpp

Phosphatidylglycerol transport via ABC system (n-C14:1, periplasm)

PG160abcpp

Phosphatidylglycerol transport via ABC system (n-C16:0, periplasm)

PG161abcpp

Phosphatidylglycerol transport via ABC system (n-C16:1, periplasm)

PG180abcpp

Phosphatidylglycerol transport via ABC system (n-C18:0, periplasm)

PG181abcpp

Phosphatidylglycerol transport via ABC system (n-C18:1, periplasm)

PGL

6-phosphogluconolactonase

PGP120abcpp

Phosphatidylglycerophosphate transport via ABC system (n-C12:0, periplasm)

PGP140abcpp

Phosphatidylglycerophosphate transport via ABC system (n-C14:0, periplasm)

PGP141abcpp

Phosphatidylglycerophosphate transport via ABC system (n-C14:1, periplasm)

PGP160abcpp

Phosphatidylglycerophosphate transport via ABC system (n-C16:0, periplasm)

PGP161abcpp

Phosphatidylglycerophosphate transport via ABC system (n-C16:1, periplasm)

PGP180abcpp

Phosphatidylglycerophosphate transport via ABC system (n-C18:0, periplasm)

PGP181abcpp

Phosphatidylglycerophosphate transport via ABC system (n-C18:1, periplasm)

PGPP120

Phosphatidylglycerol phosphate phosphatase (n-C14:0)

PGPP140

Phosphatidylglycerol phosphate phosphatase (n-C14:0)

PGPP141

Phosphatidylglycerol phosphate phosphatase (n-C14:1)

PGPP160

Phosphatidylglycerol phosphate phosphatase (n-C16:0)

PGPP161

Phosphatidylglycerol phosphate phosphatase (n-C16:1)

PGPP180

Phosphatidylglycerol phosphate phosphatase (n-C18:0)

PGPP181

Phosphatidylglycerol phosphate phosphatase (n-C18:1)

PHEPC

Phenylphosphate carboxylase

PHEPS

Phenylphosphate synthase

PICH

Phenylitaconyl-CoA hydratase

PIuabcpp

Phosphate transport via ABC system (uptake, periplasm)

PMDPHT

Pyrimidine phosphatase

PMEACPE

Pimeloyl-[ACP] methyl ester esterase

PPA

Inorganic diphosphatase

PPA_1pp

Inorganic diphosphatase (one proton translocation) (periplasm)

PPA2

Inorganic triphosphatase

PPAAFDOR

Propanal:ferredoxin oxidoreductase

PPBNGS

Porphobilinogen synthase

PPC

Phosphoenolpyruvate carboxylase

PPGPPDP

Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase

PPNDH

Prephenate dehydratase

PPS

Phosphoenolpyruvate synthase

PRAMPC

Phosphoribosyl-AMP cyclohydrolase

PRATPP

Phosphoribosyl-ATP pyrophosphatase

PRFGS

Phosphoribosylformylglycinamidine synthase

PS120abcpp

Phosphatidylserine transport via ABC system (n-C12:0, periplasm)

PS140abcpp

Phosphatidylserine transport via ABC system (n-C14:0, periplasm)

PS141abcpp

Phosphatidylserine transport via ABC system (n-C14:1, periplasm)

PS160abcpp

Phosphatidylserine transport via ABC system (n-C16:0, periplasm)

PS161abcpp

Phosphatidylserine transport via ABC system (n-C16:1, periplasm)

PS180abcpp

Phosphatidylserine transport via ABC system (n-C18:0, periplasm)

PS181abcpp

Phosphatidylserine transport via ABC system (n-C18:1, periplasm)

PSP_L

Phosphoserine phosphatase (L-serine)

PUTA3

PUTA3

QULNS

Quinolinate synthase

RBFSa

Riboflavin synthase

RNDR1

Ribonucleoside-diphosphate reductase (ADP)

RNDR2

Ribonucleoside-diphosphate reductase (GDP)

RNDR3

Ribonucleoside-diphosphate reductase (CDP)

RNDR4

Ribonucleoside-diphosphate reductase (UDP)

ROO

Rubredoxin oxygen reductase

RZ5PP

Alpha-ribazole 5-phosphate phosphatase

SADT2

Sulfate adenyltransferase

SELNPS

Selenophosphate synthase

SO3abcpp

Sulfite transport via ABC system (periplasm)

SSALy

Succinate-semialdehyde dehydrogenase (NADP)

SULabcpp

Sulfate transport via ABC system (periplasm)

SULFACabcpp

Sulfoacetate transport via ABC system (periplasm)

SULR

Sulfite reductase (NADPH2)

SULR3

Sulfite reductase (ferredoxin dependent)

TAURabcpp

Taurine transport via ABC system (periplasm)

TDPGDH

DTDPglucose 4,6-dehydratase

THRS

Threonine synthase

THZPSN3

Thiazole phosphate synthesis

TRPS1

Tryptophan synthase (indoleglycerol phosphate)

TSULabcpp

Thiosulfate transport via ABC system (periplasm)

TUNGSabcpp

Tungstate transport via ABC system (periplasm)

UACMAMO

UDP-N-acetyl-D-mannosamine oxidoreductase

UDCPDP

Undecaprenyl-diphosphatase

UDPGD

UDPglucose 6-dehydrogenase

UHGADA

UDP-3-O-acetylglucosamine deacetylase

UHGADAN

UDP-3-N-2-N-acetylglucosediamine deacetylase

UM4PCP

UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase

UPLA4FNF

Undecaprenyl phosphate-L-Ara4FN formylase

UPP3S

Uroporphyrinogen-III synthase

USHD

UDP-sugar hydrolase

USHDN

UDP-N-2,N-3-di-(3-hydroxyacyl)glucosediamine pyrophosphatase

VALabcpp

L-valine transport via ABC system (periplasm)

VECOAH

3-hydroxyacyl-CoA dehydratase (3-hydroxypentanoyl-CoA)

VNDH_2

4-hydroxybenzaldehyde dehydrogenase

WCOS

Tungsten pterin cofactor synthase

ZNabcpp

Zinc (Zn+2) transport via ABC system (periplasm)