3HAD100

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0)

3HAD120

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:0)

3HAD121

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:1)

3HAD140

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:0)

3HAD141

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:1)

3HAD160

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:0)

3HAD161

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:1)

3HAD180

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:0)

3HAD181

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:1)

3HAD40

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C4:0)

3HAD60

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C6:0)

3HAD80

3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)

4HTHRS

4-Hydroxy-L-threonine synthase

5HBZIDMT

5-hydroxybenzimidazole methyltransferase

ABUTD

Aminobutyraldehyde dehydrogenase

ACAFDOR

Acetaldehyde:ferredoxin oxidoreductase

ACONTa

Aconitase (half-reaction A, Citrate hydro-lyase)

ACONTb

Aconitase (half-reaction B, Isocitrate hydro-lyase)

ADA

Adenosine deaminase

ADCYRS

Adenosylcobyric acid synthase (glutamine-hydrolysing)

ADD

Adenine deaminase

ADPRDP

ADPribose diphosphatase

AHCYSNS

S-adenosylhomocysteine nucleosidase

ALLTN

Allantoinase

AMAA

N-acetylmuramoyl-L-alanine amidase

ANS2

Anthranilate synthase 2

ARBabc

L-arabinose transport via ABC system

ARGDr

Arginine deiminase

ARGN

Arginase

ASNS1

Asparagine synthase (glutamine-hydrolysing)

ATPM

ATP maintenance requirement

ATPS4r

ATP synthase (four protons for one ATP)

BIOMASS_Cl_DSM_WT_46p666M1

Clostridium ljungdahlii biomass objective function (iAF1xxx) - WT - with 46.666 GAM estimate

CA2abc

Calcium transport via ABC system

CBPS

Carbamoyl-phosphate synthase (glutamine-hydrolysing)

COabc

Cobalt transport via ABC system

CODH4

Carbon monoxide dehydrogenase / acetyl-CoA synthase 2

CODH_ACS

CODH/Acetyl-CoA synthase (Wood-Ljundahl)

CPC5MT

Precorrin-5 C1-methyltransferase

CS

Citrate synthase

CSND

Cytosine deaminase

CTPS2

CTP synthase (glutamine)

Cuabc

Copper transport via ABC system

CYRDAS

Cob(II)yrinate a,c-diamide synthase (glutamine-hydrolysing)

CYSabc

L-cysteine transport via ABC system

CYSDS

Cysteine Desulfhydrase

CYSTGL

Cystathionine g lyase

CYSTL

Cystathionine b-lyase

CYSTS

Cystathionine beta synthase

CYTD

Cytidine deaminase

DADA

Deoxyadenosine deaminase

DCMPDA

DCMP deaminase

DCYTD

Deoxycytidine deaminase

DDPA

3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase

DHAD1

Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)

DHAD2

Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)

DHDPS

Dihydrodipicolinate synthase

DHORTS

Dihydroorotase

DHPPDA

Diaminohydroxyphosphoribosylaminopyrimidine deaminase

DHPS

Dihydropteroate synthase

DHQTi

3-dehydroquinate dehydratase, irreversible

DMPPS

1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)

DUTPDP

DUTP diphosphatase

ECOAH1

3-hydroxyacyl-CoA dehydratase (3-hydroxybutanoyl-CoA)

ENO

Enolase

FBP

Fructose-bisphosphatase

FE2abc

Iron (II) transport via ABC system

FGLU

Formimidoylglutamase

FUM

Fumarase

G5SADs

L-glutamate 5-semialdehyde dehydratase (spontaneous)

GALabc

D-galactose transport via ABC system

GALCTD

Galactarate dehydratase

GHMT2r

Glycine hydroxymethyltransferase, reversible

GLCRD

Glucarate dehydratase

GLNabc

L-glutamine transport via ABC system

GLUabc

L-glutamate transport via ABC system

GLUDy

Glutamate dehydrogenase (NADP)

GLUPRT

Glutamine phosphoribosyldiphosphate amidotransferase

GMPS2

GMP synthase

GPDDA1

Glycerophosphodiester phosphodiesterase (Glycerophosphocholine)

GPDDA2

Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)

GPDDA4

Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol)

GTPCI

GTP cyclohydrolase I

GTPCII

GTP cyclohydrolase II

GUAD

Guanine deaminase

H2Ot

H2O transport via diffusion

HAMR

Hydroxylamine reductase

HCITS

Homocitrate synthase

HCO3E

HCO3 equilibration reaction

HISTD

Histidinol dehydrogenase

HISTP

Histidinol-phosphatase

HMBS

Hydroxymethylbilane synthase

HXAND

Hypoxanthine dehydrogenase

IGPDH

Imidazoleglycerol-phosphate dehydratase

IGPS

Indole-3-glycerol-phosphate synthase

IMPC

IMP cyclohydrolase

IMPD

IMP dehydrogenase

IPDPS

1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)

IPPMIa

3-isopropylmalate dehydratase

IPPMIb

2-isopropylmalate hydratase

IPPS

2-isopropylmalate synthase

IZPN

Imidazolonepropionase

Kabc

Potassium ABC transporter

LDAPAT

LL-diaminopimelate aminotransferase

MALTabc

Maltose transport via ABC system

MALTHXabc

Maltohexaose transport via ABC system

MALTTRabc

Maltotriose transport via ABC system

MECDPDH2

2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase

METAT

Methionine adenosyltransferase

MNabc

Manganese transport via ABC system

MOBDabc

Molybdate transport via ABC system

MOHMT

3-methyl-2-oxobutanoate hydroxymethyltransferase

MTAN

Methylthioadenosine nucleosidase

MTHFC

Methenyltetrahydrofolate cyclohydrolase

MTHTHFSs

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous)

NADS2

Nicotinate-mononucleotide adenylyltransferase

NFORGLUAH

N-Formyl-L-glutamate amidohydrolase

NIabc

Nickel transport via ABC system

NIT1b

Nitrogenase

NNAM

Nicotinamidase

NTPP1

Nucleoside triphosphate pyrophosphorylase (dgtp)

NTPP10

Nucleoside triphosphate pyrophosphorylase (ditp)

NTPP2

Nucleoside triphosphate pyrophosphorylase (gtp)

NTPP3

Nucleoside triphosphate pyrophosphorylase (dctp)

NTPP4

Nucleoside triphosphate pyrophosphorylase (ctp)

NTPP5

Nucleoside triphosphate pyrophosphorylase (datp)

NTPP6

Nucleoside triphosphate pyrophosphorylase (atp)

NTPP7

Nucleoside triphosphate pyrophosphorylase (dttp)

NTPP8

Nucleoside triphosphate pyrophosphorylase (utp)

NTPP9

Nucleoside triphosphate pyrophosphorylase (itp)

NTRARf

Nitrate reductase (ferredoxin)

NTRIR5

Nitrite Reductase (hydroxylamine forming)

PGPP120

Phosphatidylglycerol phosphate phosphatase (n-C14:0)

PGPP140

Phosphatidylglycerol phosphate phosphatase (n-C14:0)

PGPP160

Phosphatidylglycerol phosphate phosphatase (n-C16:0)

PGPP161

Phosphatidylglycerol phosphate phosphatase (n-C16:1)

PGPP180

Phosphatidylglycerol phosphate phosphatase (n-C18:0)

PGPP181

Phosphatidylglycerol phosphate phosphatase (n-C18:1)

PIabc

Phosphate transport via ABC system

PLPS

Pyridoxal-5-phosphate synthase

PPA

Inorganic diphosphatase

PPBNGS

Porphobilinogen synthase

PPNDH

Prephenate dehydratase

PRAMPC

Phosphoribosyl-AMP cyclohydrolase

PRATPP

Phosphoribosyl-ATP pyrophosphatase

PRFGS

Phosphoribosylformylglycinamidine synthase

PSP_L

Phosphoserine phosphatase (L-serine)

PTRCabc

Putrescine transport via ABC system

QULNS

Quinolinate synthase

RBFSa

Riboflavin synthase

RIBabc

D-ribose transport via ABC system

RNDR1

Ribonucleoside-diphosphate reductase (ADP)

RNDR2

Ribonucleoside-diphosphate reductase (GDP)

RNDR3

Ribonucleoside-diphosphate reductase (CDP)

RNDR4

Ribonucleoside-diphosphate reductase (UDP)

RNTR1

Ribonucleoside triphosphate reductase ATP

RNTR2

Ribonucleoside triphosphate reductase GTP

RNTR3

Ribonucleoside triphosphate reductase CTP

RNTR4

Ribonucleoside triphosphate reductase UTP

RZ5PP

Alpha-ribazole 5-phosphate phosphatase

SADT2

Sulfate adenyltransferase

SDPDS

Succinyl-diaminopimelate desuccinylase

SELNPS

Selenophosphate synthase

SPMDabc

Spermidine transport via ABC system

SSALx

Succinate-semialdehyde dehydrogenase (NAD)

SULabc

Sulfate transport via ABC system

SULR3

Sulfite reductase (ferredoxin dependent)

TAURabc

Taurine transport via ABC system

TDPGDH

DTDPglucose 4,6-dehydratase

THDPS

Tetrahydrodipicolinate succinylase

THRS

Threonine synthase

TMN

Thiaminase

TRPS1

Tryptophan synthase (indoleglycerol phosphate)

TRPS2

Tryptophan synthase (indole)

UAG2EMA

UDP-N-acetyl-D-glucosamine 2-epimerase (Hydrolysis)

UDCPDP

Undecaprenyl-diphosphatase

UDPGD

UDPglucose 6-dehydrogenase

UPP3S

Uroporphyrinogen-III synthase

URCN

Urocanase

XAND

Xanthine dehydrogenase

XYLabc

D-xylose transport via ABC system

ZNabc

Zinc transport via ABC system