Reaction: BIOMASS_Cl_DSM_WT_46p666M1

Pseudoreaction ?

Descriptive name:

Clostridium ljungdahlii biomass objective function (iAF1xxx) - WT - with 46.666 GAM estimate

Model:

iHN637

Reaction:

0.000223 10fthf_c + 0.000223 5mthf_c + 0.000279 accoa_c + 0.000223 adocbl_c + 0.385133 ala__L_c + 0.000223 amet_c + 0.221767 arg__L_c + 0.180728 asn__L_c + 0.180728 asp__L_c + 46.719016 atp_c + 2e-06 btn_c + 0.005098 ca2_c + 0.000223 chor_c + 0.005098 cl_c + 0.000167 coa_c + 2.5e-05 cobalt2_c + 0.040484 ctp_c + 0.000694 cu2_c + 0.068661 cys__L_c + 0.029167 datp_c + 0.013104 dctp_c + 0.013104 dgtp_c + 0.029167 dttp_c + 0.000223 fad_c + 0.013822 fe2_c + 0.197302 gln__L_c + 0.197302 glu__L_c + 0.459319 gly_c + 0.065225 gtp_c + 42.656029 h2o_c + 0.071028 his__L_c + 0.217821 ile__L_c + 0.191179 k_c + 0.337781 leu__L_c + 0.257282 lys__L_c + 3.1e-05 malcoa_c + 0.115224 met__L_c + 0.008496 mg2_c + 0.000223 mlthf_c + 0.000677 mn2_c + 7e-06 mobd_c + 0.001787 nad_c + 4.5e-05 nadh_c + 0.000112 nadp_c + 0.000335 nadph_c + 0.012745 nh4_c + 0.000316 ni2_c + 0.040045 pe140_c + 0.120861 pe160_c + 0.176979 pe161_c + 0.00707 pe181_c + 0.00961 pg140_c + 0.029005 pg160_c + 0.042474 pg161_c + 0.001696 pg181_c + 0.1389 phe__L_c + 0.165733 pro__L_c + 0.000223 pydx5p_c + 0.000223 ribflv_c + 0.161787 ser__L_c + 0.004248 so4_c + 0.000223 thf_c + 0.000223 thmpp_c + 0.190199 thr__L_c + 0.042617 trp__L_c + 0.103386 tyr__L_c + 5.5e-05 udcpdp_c + 0.043698 utp_c + 0.317261 val__L_c + 0.000333 zn2_c + 0.002669 clpn140_c + 0.008057 clpn160_c + 0.011798 clpn161_c + 0.000471 clpn181_c + 0.015433 teca_CL_c + 0.006457 murein4p4p_e + 0.006538 murein4px4p_e + 0.000807 murein4px4px4p_e → 46.666 adp_c + 46.666 h_c + 46.661751 pi_c + 0.286968 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-0.000223
5mthf_c
5-Methyltetrahydrofolate
-0.000279
accoa_c
Acetyl-CoA
-0.000223
adocbl_c
Adenosylcobalamin
46.666
adp_c
ADP C10H12N5O10P2
-0.385133
ala__L_c
L-Alanine
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.221767
arg__L_c
L-Arginine
-0.180728
asn__L_c
L-Asparagine
-0.180728
asp__L_c
L-Aspartate
-46.719016
atp_c
ATP C10H12N5O13P3
-2e-06
btn_c
Biotin
-0.005098
ca2_c
Calcium
-0.000223
chor_c
Chorismate
-0.005098
cl_c
Chloride
-0.000167
coa_c
Coenzyme A
-2.5e-05
cobalt2_c
Co2+
-0.040484
ctp_c
CTP C9H12N3O14P3
-0.000694
cu2_c
Copper
-0.068661
cys__L_c
L-Cysteine
-0.029167
datp_c
DATP C10H12N5O12P3
-0.013104
dctp_c
DCTP C9H12N3O13P3
-0.013104
dgtp_c
DGTP C10H12N5O13P3
-0.029167
dttp_c
DTTP C10H13N2O14P3
-0.000223
fad_c
Flavin adenine dinucleotide oxidized
-0.013822
fe2_c
Fe2+ mitochondria
-0.197302
gln__L_c
L-Glutamine
-0.197302
glu__L_c
L-Glutamate
-0.459319
gly_c
Glycine
-0.065225
gtp_c
GTP C10H12N5O14P3
46.666
h_c
H+
-42.656029
h2o_c
H2O H2O
-0.071028
his__L_c
L-Histidine
-0.217821
ile__L_c
L-Isoleucine
-0.191179
k_c
Potassium
-0.337781
leu__L_c
L-Leucine
-0.257282
lys__L_c
L-Lysine
-3.1e-05
malcoa_c
Malonyl CoA C24H33N7O19P3S
-0.115224
met__L_c
L-Methionine
-0.008496
mg2_c
Magnesium
-0.000223
mlthf_c
5,10-Methylenetetrahydrofolate
-0.000677
mn2_c
Manganese
-7e-06
mobd_c
Molybdate
-0.001787
nad_c
Nicotinamide adenine dinucleotide
-4.5e-05
nadh_c
Nicotinamide adenine dinucleotide - reduced
-0.000112
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.000335
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.012745
nh4_c
Ammonium
-0.000316
ni2_c
Nickel
-0.040045
pe140_c
Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)
-0.120861
pe160_c
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.176979
pe161_c
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.00707
pe181_c
Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)
-0.00961
pg140_c
Phosphatidylglycerol (ditetradecanoyl, n-C14:0)
-0.029005
pg160_c
Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
-0.042474
pg161_c
Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)
-0.001696
pg181_c
Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)
-0.1389
phe__L_c
L-Phenylalanine
46.661751
pi_c
Phosphate
0.286968
ppi_c
Diphosphate
-0.165733
pro__L_c
L-Proline
-0.000223
pydx5p_c
Pyridoxal 5'-phosphate
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.161787
ser__L_c
L-Serine
-0.004248
so4_c
Sulfate
-0.000223
thf_c
5,6,7,8-Tetrahydrofolate
-0.000223
thmpp_c
Thiamine diphosphate
-0.190199
thr__L_c
L-Threonine
-0.042617
trp__L_c
L-Tryptophan
-0.103386
tyr__L_c
L-Tyrosine
-5.5e-05
udcpdp_c
Undecaprenyl diphosphate
-0.043698
utp_c
UTP C9H11N2O15P3
-0.317261
val__L_c
L-Valine
-0.000333
zn2_c
Zinc
-0.002669
clpn140_c
Cardiolipin (tetratetradecanoyl, n-C14:0)
-0.008057
clpn160_c
Cardiolipin (tetrahexadecanoyl, n-C16:0)
-0.011798
clpn161_c
Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)
-0.000471
clpn181_c
Cardiolipin (tetraoctadec-11-enoyl, n-C18:1)
-0.015433
teca_CL_c
Glycerol teichoic acid (n=25), unlinked, D-ala (specific CL)
-0.006457
murein4p4p_e
Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)
-0.006538
murein4px4p_e
Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.000807
murein4px4px4p_e
Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)

Default bounds:

(0.0, 1000.0)

Objective coefficient:

1.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:

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Universal reaction ?

External database links

Provided by MetaNetX (CC BY 4.0)

Old identifiers

    Cl_biomass_DSM_WT_46p666M1

BIOMASS_Cl_DSM_WT_46p666M1 in other models