3HCINNMH

3-hydroxycinnamate hydroxylase

3HPPPNH

3-(3-hydroxy-phenyl)propionate hydroxylase

4HTHRS

4-Hydroxy-L-threonine synthase

AB6PGH

Arbutin 6-phosphate glucohydrolase

ABUTD

Aminobutyraldehyde dehydrogenase

ACODA

Acetylornithine deacetylase

ADA

Adenosine deaminase

ADD

Adenine deaminase

AGDC

N-acetylglucosamine-6-phosphate deacetylase

AGMT

Agmatinase

AHCi

Adenosylhomocysteinase

AHCYSNS

S-adenosylhomocysteine nucleosidase

ALAabc

L-alanine transport via ABC system

ALDD19xr

Aldehyde dehydrogenase (phenylacetaldehyde, NAD)

ALDD2x

Aldehyde dehydrogenase (acetaldehyde, NAD)

ALLTAHr

Allantoate amidinohydrolase reversible

ALLTN

Allantoinase

ALTRH

Altronate hydrolase

AMPMS

4-amino-2-methyl-5-phosphomethylpyrimidine synthetase

AMPN

AMP nucleosidase

AP4AH

Ap4A hydrolase

AP5AH

Ap5A hydrolase

ARBabc

L-arabinose transport via ABC system

ARGabc

L-arginine transport via ABC system

ASNabc

L-asparagine transport via ABC system

ASNN

L-asparaginase

ASNS1

Asparagine synthase (glutamine-hydrolysing)

ASPabc

L-aspartate transport via ABC system

ATPM

ATP maintenance requirement

ATPS4r

ATP synthase (four protons for one ATP)

BETALDHx

Betaine-aldehyde dehydrogenase

BETALDHy

Betaine-aldehyde dehydrogenase

BIOMASS_Ecoli

BiomassEcoli

BPNT

3',5'-bisphosphate nucleotidase

BSORx

Biotin sulfoxide reductase

BSORy

Biotin sulfoxide reductase

C120SN

Fatty acid biosynthesis (n-C12:0)

C140SN

Fatty acid biosynthesis (n-C14:0)

C141SN

Fatty acid biosynthesis (n-C14:1)

C160SN

Fatty acid biosynthesis (n-C16:0)

C161SN

Fatty acid biosynthesis (n-C16:1)

C181SN

Fatty acid biosynthesis (n-C18:1)

CAT

Catalase

CBIAT_DELETE

Cobinamide adenyltransferase

CBL1abc

Cob(1)alamin transport via ABC system

CBLAT_DELETE

Cob(I)alamin adenosyltransferase

CBPS

Carbamoyl-phosphate synthase (glutamine-hydrolysing)

CDAPPA_EC

CDP-Diacylglycerol pyrophostatase (Ecoli)

CHLabc

Choline transport via ABC system

CMPN

CMP nucleosidase

CPPPGO

Coproporphyrinogen oxidase (O2 required)

CRNCDH

Carnityl-CoA dehydratse

CS

Citrate synthase

CSND

Cytosine deaminase

CTPS2

CTP synthase (glutamine)

CYSabc

L-cysteine transport via ABC system

CYSDS

Cysteine Desulfhydrase

CYSTL

Cystathionine b-lyase

CYTBD

Cytochrome oxidase bd (ubiquinol-8: 2 protons)

CYTBO3

Cytochrome oxidase bo3 (ubiquinol-8: 2.5 protons)

CYTD

Cytidine deaminase

DAAD

D-Amino acid dehydrogenase

DADA

Deoxyadenosine deaminase

DAPabc

M-diaminopimelic acid ABC transport

DCTPD

DCTP deaminase

DCYTD

Deoxycytidine deaminase

DDPA

3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase

DHAD1

Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)

DHAD2

Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)

DHDPS

Dihydrodipicolinate synthase

DHORTS

Dihydroorotase

DHPPDA2

Diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp)

DHPTDCs

4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous)

DHQTi

3-dehydroquinate dehydratase, irreversible

DKMPPD

2,3-diketo-5-methylthio-1-phosphopentane degradation reaction

DKMPPD2

2 3 diketo 5 methylthio 1 phosphopentane degradation reaction

DMPPS

1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)

DMSOR1

Dimethyl sulfoxide reductase (Menaquinol 8)

DMSOR2

Dimethyl sulfoxide reductase (Demethylmenaquinol 8)

DNMPPA

Dihydroneopterin monophosphate dephosphorylase

DNTPPA

Dihydroneopterin triphosphate pyrophosphatase

DUTPDP

DUTP diphosphatase

E4PD

Erythrose 4-phosphate dehydrogenase

EDD

6-phosphogluconate dehydratase

ENO

Enolase

FAO1

Fatty acid oxidation (tetradecanoate)

FAO2

Fatty acid oxidation (n-C16:0)

FAO3

Fatty acid oxidation (octadecanoate)

FAO4

Fatty acid oxidation (Butanoyl-CoA )

FBP

Fructose-bisphosphatase

FE2abc

Iron (II) transport via ABC system

FFSD

Beta-fructofuranosidase

FTHFD

Formyltetrahydrofolate deformylase

FUM

Fumarase

G1PP

Glucose-1-phosphatase

G5SADs

L-glutamate 5-semialdehyde dehydratase (spontaneous)

G6PDA

Glucosamine-6-phosphate deaminase

GALabc

D-galactose transport via ABC system

GALCTD

Galactarate dehydratase

GALCTND

Galactonate dehydratase

GALS3

A-galactosidase (melibiose)

GCALDD

Glycolaldehyde dehydrogenase

GHMT2r

Glycine hydroxymethyltransferase, reversible

GLCRD

Glucarate dehydratase

GLNabc

L-glutamine transport via ABC system

GLUabc

L-glutamate transport via ABC system

GLUDy

Glutamate dehydrogenase (NADP)

GLUN

Glutaminase

GLUPRT

Glutamine phosphoribosyldiphosphate amidotransferase

GLYBabc

Glycine betaine transport via ABC system

GLYC3Pabc

Sn-Glycerol 3-phosphate transport via ABC system

GLYOX

Hydroxyacylglutathione hydrolase

GMAND

GDP-D-mannose dehydratase

GMHEPPA

D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase

GMPS2

GMP synthase

GP4GH

Gp4G hydrolase

GPDDA1

Glycerophosphodiester phosphodiesterase (Glycerophosphocholine)

GPDDA2

Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)

GPDDA3

Glycerophosphodiester phosphodiesterase (Glycerophosphoserine)

GPDDA4

Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol)

GPDDA5

Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol)

GSPMDA

Glutathionylspermidine amidase

GTPCI_1

GTP cyclohydrolase I

GTPCII2

GTP cyclohydrolase II (25drapp)

GUAD

Guanine deaminase

H2Ot

H2O transport via diffusion

HCO3E

HCO3 equilibration reaction

HEMEOS

Heme O synthase

HISabc

L-histidine transport via ABC system

HISTD

Histidinol dehydrogenase

HISTP

Histidinol-phosphatase

HKNDDH_1

2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase

HKNTDH_1

2-hydroxy-6-ketononotrienedioate hydrolase

HMBS

Hydroxymethylbilane synthase

HYPOE

Hypothetical enyme

ICHORT

Isochorismatase

IGPDH

Imidazoleglycerol-phosphate dehydratase

IGPS

Indole-3-glycerol-phosphate synthase

ILEabc

L-isoleucine transport via ABC system

IMPC

IMP cyclohydrolase

IMPD

IMP dehydrogenase

IPDPS

1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)

IPPMIa

3-isopropylmalate dehydratase

IPPMIb

2-isopropylmalate hydratase

IPPS

2-isopropylmalate synthase

Kabc

Potassium ABC transporter

KDOPP

3-deoxy-manno-octulosonate-8-phosphatase

KDOPS

3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase

LACZ

B-galactosidase

LCADi

Lactaldehyde dehydrogenase

LEUabc

L-leucine transport via ABC system

LPLIPA1

Lysophospholipase L (acyl-glycerophosphoglycerol)

LPLIPA2

Lysophospholipase L (acyl-glycerophosphoethanolamine)

LPLIPA3

Lysophospholipase L (acyl-glycerophosphocholine)

LYSabc

L-lysine transport via ABC system

MALS

Malate synthase

MALTabc

Maltose transport via ABC system

MALTHXabc

Maltohexaose transport via ABC system

MALTPTabc

Maltopentaose transport via ABC system

MALTTRabc

Maltotriose transport via ABC system

MALTTTRabc

Maltotetraose transport via ABC system

MCITD

2-methylcitrate dehydratase

MCITS

2-methylcitrate synthase

MDRPD

5-Methylthio-5-deoxy-D-ribulose 1-phosphate dehydratase

MECDPDH

2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase

METabc

L-methionine transport via ABC system

METAT

Methionine adenosyltransferase

METDabc

D-methionine transport via ABC system

MI1PP

Myo-inositol 1-phosphatase

MICITDr

2-methylisocitrate dehydratase

MLTG1

Maltodextrin glucosidase (maltotriose)

MLTG2

Maltodextrin glucosidase (maltotetraose)

MLTG3

Maltodextrin glucosidase (maltopentaose)

MLTG4

Maltodextrin glucosidase (maltohexaose)

MLTG5

Maltodextrin glucosidase (maltoheptaose)

MNNH

D-mannonate hydrolyase

MOHMT

3-methyl-2-oxobutanoate hydroxymethyltransferase

MTAN

Methylthioadenosine nucleosidase

MTHFC_1

Methenyltetrahydrofolate cyclohydrolase

NACODA

N-acetylornithine deacetylase

NADDP

NAD diphosphatase

NADPPPS

NADP phosphatase

NAMNPP

Nicotinic acid mononucleotide pyrophosphorylase

NMNDA

Nicotinamide-nucleotide amidase

NMNN

NMN nucleosidase

NMNt7

NMN transport via NMN glycohydrolase

NNAM

Nicotinamidase

NO3R1

Nitrate reductase (Ubiquinol-8)

NO3R2

Nitrate reductase (Menaquinol-8)

NTD1

5'-nucleotidase (dUMP)

NTD10

5'-nucleotidase (XMP)

NTD11

5'-nucleotidase (IMP)

NTD2

5'-nucleotidase (UMP)

NTD3

5'-nucleotidase (dCMP)

NTD4

5'-nucleotidase (CMP)

NTD5

5'-nucleotidase (dTMP)

NTD6

5'-nucleotidase (dAMP)

NTD7

5'-nucleotidase (AMP)

NTD8

5'-nucleotidase (dGMP)

NTD9

5'-nucleotidase (GMP)

NTPP1

Nucleoside triphosphate pyrophosphorylase (dgtp)

NTPP2

Nucleoside triphosphate pyrophosphorylase (gtp)

NTPP3

Nucleoside triphosphate pyrophosphorylase (dctp)

NTPP4

Nucleoside triphosphate pyrophosphorylase (ctp)

NTPP5

Nucleoside triphosphate pyrophosphorylase (datp)

NTPP6

Nucleoside triphosphate pyrophosphorylase (atp)

NTPP7

Nucleoside triphosphate pyrophosphorylase (dttp)

NTPP8

Nucleoside triphosphate pyrophosphorylase (utp)

NTPTP1

Nucleoside triphosphate tripolyhydrolase

NTPTP2

Nucleoside triphosphate tripolyhydrolase

NTRIR2x

Nitrite Reductase (NADH)

OP4ENH

2-oxopent-4-enoate hydratase

ORNabc

Ornithine transport via ABC system

P5CD

1-pyrroline-5-carboxylate dehydrogenase

PAPA_EC

Phosphatidate phosphatase

PDX5PS

Pyridoxine 5'-phosphate synthase

PDXPP

Pyridoxine 5-phosphate phosphatase

PEAMNO

Phenethylamine oxidase

PGL

6-phosphogluconolactonase

PGLYCP

Phosphoglycolate phosphatase

PGPP_EC

Phosphatidylglycerol phosphate phosphatase (Ecoli)

PIabc

Phosphate transport via ABC system

PLIPA1

Phospholipase A (phosphatidylglycerol)

PLIPA2

Phosphlipase A (phosphatidylethanolamine)

PLIPA3

Phospholipase A (phosphatidylcholine)

PMDPHT

Pyrimidine phosphatase

POX

Pyruvate oxidase

PPA

Inorganic diphosphatase

PPBNGS

Porphobilinogen synthase

PPC

Phosphoenolpyruvate carboxylase

PPNDH

Prephenate dehydratase

PPPGO

Protoporphyrinogen oxidase (aerobic)

PPS

Phosphoenolpyruvate synthase

PRAMPC

Phosphoribosyl-AMP cyclohydrolase

PRATPP

Phosphoribosyl-ATP pyrophosphatase

PRFGS

Phosphoribosylformylglycinamidine synthase

PROabc

L-proline transport via ABC system

PSP_L

Phosphoserine phosphatase (L-serine)

PTRCabc

Putrescine transport via ABC system

PYAM5PO

Pyridoxamine 5'-phosphate oxidase

PYDXPP

Pyridoxal 5-phosphate phosphatase

QULNS_1

Quinolinate synthase

RBFSa

Riboflavin synthase

RIBabc

D-ribose transport via ABC system

RNDR1

Ribonucleoside-diphosphate reductase (ADP)

RNDR2

Ribonucleoside-diphosphate reductase (GDP)

RNDR3

Ribonucleoside-diphosphate reductase (CDP)

RNDR4

Ribonucleoside-diphosphate reductase (UDP)

RNTR1

Ribonucleoside triphosphate reductase ATP

RNTR2

Ribonucleoside triphosphate reductase GTP

RNTR3

Ribonucleoside triphosphate reductase CTP

RNTR4

Ribonucleoside triphosphate reductase UTP

RZ5PP

Alpha-ribazole 5-phosphate phosphatase

SADH

Succinylarginine dihydrolase

SADT2

Sulfate adenyltransferase

SDPDS

Succinyl-diaminopimelate desuccinylase

SELNPS

Selenophosphate synthase

SGDS

Succinylglutamate desuccinylase

SGSAD

Succinylglutamic semialdehyde dehydrogenase

SPMDabc

Spermidine transport via ABC system

SSALx

Succinate-semialdehyde dehydrogenase (NAD)

SSALy

Succinate-semialdehyde dehydrogenase (NADP)

SUCBZS

O-succinylbenzoate-CoA synthase

SUCCabc

Succinate transport via ABC system

SULabc

Sulfate transport via ABC system

SULR

Sulfite reductase (NADPH2)

TARTD

L(+)-tartrate dehydratase

TAURabc

Taurine transport via ABC system

TDPGDH

DTDPglucose 4,6-dehydratase

THDPS

Tetrahydrodipicolinate succinylase

THMabc

Thiamine transport via ABC system

THRabc

L-threonine transport via ABC system

THRS

Threonine synthase

THZPSN

Thiazole phosphate synthesis

TMAOR1

Trimethylamine N-oxide reductase (menaquinol 8)

TMAOR2

Trimethylamine N-oxide reductase (demethylmenaquinol 8)

TRE6PH

Trehalose-6-phosphate hydrolase

TRE6PP

Trehalose-phosphatase

TREH

Alpha,alpha-trehalase

TRPAS2

Tryptophanase (L-tryptophan)

TRPS1

Tryptophan synthase (indoleglycerol phosphate)

TRPS2

Tryptophan synthase (indole)

TSULabc

Thiosulfate transport via ABC system

UACMAMO

UDP-N-acetyl-D-mannosamine oxidoreductase

UDCPDP

Undecaprenyl-diphosphatase

UDPGD

UDPglucose 6-dehydrogenase

UGLYCH

Ureidoglycolate hydrolase

UHGADA

UDP-3-O-acetylglucosamine deacetylase

UPP3S

Uroporphyrinogen-III synthase

USHD

UDP-sugar hydrolase

VALabc

L-valine transport via ABC system

XYLabc

D-xylose transport via ABC system