Reaction: BIOMASS_Gm_GS15_core_79p20M

Pseudoreaction ?

Descriptive name:

Geobacter metallireducens biomass objective function (iAF987) - core - with 79.20 GAM estimate

Model:

iAF987

Reaction:

0.000223 10fthf_c + 2.5e-05 2fe2s_c + 0.00025 4fe4s_c + 0.5142 ala__L_c + 0.000223 amet_c + 0.2961 arg__L_c + 0.2413 asn__L_c + 0.2413 asp__L_c + 79.302794 atp_c + 2e-06 btn_c + 0.005048 ca2_c + 0.005048 cl_c + 0.000168 coa_c + 2.4e-05 cobalt2_c + 0.0785 ctp_c + 0.000687 cu2_c + 0.09168 cys__L_c + 0.03363 datp_c + 0.04933 dctp_c + 0.04933 dgtp_c + 0.03363 dttp_c + 0.000223 fad_c + 0.014083 fe2_c + 0.2634 gln__L_c + 0.2634 glu__L_c + 0.6133 gly_c + 0.1265 gtp_c + 73.84599 h2o_c + 0.09484 his__L_c + 0.2908 ile__L_c + 0.1893 k_c + 0.451 leu__L_c + 0.3435 lys__L_c + 0.1538 met__L_c + 0.008413 mg2_c + 0.000223 mlthf_c + 0.00067 mn2_c + 7e-06 mobd_c + 7e-06 mocogdp_c + 0.000223 mql8_c + 0.001787 nad_c + 0.000112 nadp_c + 0.01262 nh4_c + 0.000313 ni2_c + 0.03673 pe160_c + 0.04192 pe161_c + 0.1855 phe__L_c + 0.000223 pheme_c + 0.2213 pro__L_c + 0.000223 pydx5p_c + 0.000223 ribflv_c + 0.216 ser__L_c + 0.000223 sheme_c + 0.004206 so4_c + 0.000223 thf_c + 0.000223 thmpp_c + 0.2539 thr__L_c + 0.0569 trp__L_c + 0.138 tyr__L_c + 5.5e-05 udcpdp_c + 0.08473 utp_c + 0.4236 val__L_c + 0.000331 zn2_c + 0.02337 kdo2lipid4_e + 0.01638 murein5px4p_p + 0.06821 pe160_p + 0.07785 pe161_p ⇌ 79.2 adp_c + 79.2 h_c + 79.19579 pi_c + 0.5584 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-2.5e-05
2fe2s_c
[2Fe-2S] iron-sulfur cluster
-0.00025
4fe4s_c
[4Fe-4S] iron-sulfur cluster
79.2
adp_c
ADP C10H12N5O10P2
-0.5142
ala__L_c
L-Alanine
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.2961
arg__L_c
L-Arginine
-0.2413
asn__L_c
L-Asparagine
-0.2413
asp__L_c
L-Aspartate
-79.302794
atp_c
ATP C10H12N5O13P3
-2e-06
btn_c
Biotin
-0.005048
ca2_c
Calcium
-0.005048
cl_c
Chloride
-0.000168
coa_c
Coenzyme A
-2.4e-05
cobalt2_c
Co2+
-0.0785
ctp_c
CTP C9H12N3O14P3
-0.000687
cu2_c
Copper
-0.09168
cys__L_c
L-Cysteine
-0.03363
datp_c
DATP C10H12N5O12P3
-0.04933
dctp_c
DCTP C9H12N3O13P3
-0.04933
dgtp_c
DGTP C10H12N5O13P3
-0.03363
dttp_c
DTTP C10H13N2O14P3
-0.000223
fad_c
Flavin adenine dinucleotide oxidized
-0.014083
fe2_c
Fe2+ mitochondria
-0.2634
gln__L_c
L-Glutamine
-0.2634
glu__L_c
L-Glutamate
-0.6133
gly_c
Glycine
-0.1265
gtp_c
GTP C10H12N5O14P3
79.2
h_c
H+
-73.84599
h2o_c
H2O H2O
-0.09484
his__L_c
L-Histidine
-0.2908
ile__L_c
L-Isoleucine
-0.1893
k_c
Potassium
-0.451
leu__L_c
L-Leucine
-0.3435
lys__L_c
L-Lysine
-0.1538
met__L_c
L-Methionine
-0.008413
mg2_c
Magnesium
-0.000223
mlthf_c
5,10-Methylenetetrahydrofolate
-0.00067
mn2_c
Manganese
-7e-06
mobd_c
Molybdate
-7e-06
mocogdp_c
Molybdopterin guanine dinucleotide
-0.000223
mql8_c
Menaquinol 8
-0.001787
nad_c
Nicotinamide adenine dinucleotide
-0.000112
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.01262
nh4_c
Ammonium
-0.000313
ni2_c
Nickel
-0.03673
pe160_c
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.04192
pe161_c
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.1855
phe__L_c
L-Phenylalanine
-0.000223
pheme_c
Protoheme C34H30FeN4O4
79.19579
pi_c
Phosphate
0.5584
ppi_c
Diphosphate
-0.2213
pro__L_c
L-Proline
-0.000223
pydx5p_c
Pyridoxal 5'-phosphate
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.216
ser__L_c
L-Serine
-0.000223
sheme_c
Siroheme C42H36FeN4O16
-0.004206
so4_c
Sulfate
-0.000223
thf_c
5,6,7,8-Tetrahydrofolate
-0.000223
thmpp_c
Thiamine diphosphate
-0.2539
thr__L_c
L-Threonine
-0.0569
trp__L_c
L-Tryptophan
-0.138
tyr__L_c
L-Tyrosine
-5.5e-05
udcpdp_c
Undecaprenyl diphosphate
-0.08473
utp_c
UTP C9H11N2O15P3
-0.4236
val__L_c
L-Valine
-0.000331
zn2_c
Zinc
-0.02337
kdo2lipid4_e
KDO(2)-lipid IV(A)
-0.01638
murein5px4p_p
Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.06821
pe160_p
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.07785
pe161_p
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)

Default bounds:

(0.0, 0.0)

Objective coefficient:

-0.977319694724969

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:


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Universal reaction ?

External database links

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Old identifiers

    Gm_biomass_GS15_core_79p20M

BIOMASS_Gm_GS15_core_79p20M in other models