2DGLCNRx

2-dehydro-D-gluconate reductase (NADH)

2DGULRGx

2-Dehydro-L-gulonate reductase to gluconate (NADH)

2DGULRx

2-dehydro-L-gulonate reductase (NADH)

4HOXPACMON

4 hydroxyphenylacetate 3 monooxygenase nadh

ABUTD

Aminobutyraldehyde dehydrogenase

ACALD

Acetaldehyde dehydrogenase (acetylating)

AKGDH

2-Oxogluterate dehydrogenase

ALCD19

Alcohol dehydrogenase (glycerol)

ALCD2x

Alcohol dehydrogenase (ethanol)

ALCD3ir

Alcohol dehydrogenase Propanal

ALR4x

Aldose reductase (acetol)

AMPMS2

4-amino-2-methyl-5-phosphomethylpyrimidine synthetase

BIOMASS_Ec_iAF1260_core_59p81M

E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate

BIOMASS_invivo

Biomass equation adapted to in vivo conditions

BIOMASS_iRR1083_1

Biomass equation from http://www.biomedcentral.com/1752-0509/3/38

BIOMASS_iRR1083_metals_1

Biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function

BSORx

Biotin sulfoxide reductase

CDP4D6DGLCRx

CDP 4 dehydro 6 deoxyglucose reductase

CDPABEQS

CDP abequose synthase

CMCMSAD

4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase

DHBD

2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

DHPTDNRN

Dihydropteridine reductase (NADH)

DKGLCNR2x

2,5-diketo-D-gluconate reductase (NADH)

DKMPPD3

2,3-diketo-5-methylthio-1-phosphopentane degradation reaction

DMPPS

1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)

DOGULNR

2,3 dioxo-L-gulonate reductase

DURADx

Dihydrouracil dehydrogenase (NAD)

E4PD

Erythrose 4-phosphate dehydrogenase

EAR100x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C10:0)

EAR120x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:0)

EAR121x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1)

EAR140x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:0)

EAR141x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:1)

EAR160x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:0)

EAR161x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:1)

EAR180x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:0)

EAR181x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:1)

EAR40x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C4:0)

EAR60x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C6:0)

EAR80x

Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C8:0)

FADRx

FAD reductase

FALDH2

Formaldehyde dehydrogenase

FLVRx

Flavin reductase (NAD)

FMNRx

FMN reductase

GAPD

Glyceraldehyde-3-phosphate dehydrogenase

GCALDD

Glycolaldehyde dehydrogenase

GDPCOLS

GDP-L-colitose synthase

GHBDHx

Gamma-hydroxybutyrate dehydrogenase (NADH)

GLTPD

Galactitol-1-phosphate dehydrogenase

GLUDxi

Glutamate dehydrogenase NAD

GLYALDDr

D-Glyceraldehyde dehydrogenase

GLYCDx

Glycerol dehydrogenase

GLYCL

Glycine Cleavage System

GLYCLTDx

Glycolate dehydrogenase (NAD)

GULNLR

L-gulonate reductase

HACD1

3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA)

HACD1i

3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA)

HACD2

3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)

HACD2i

3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)

HACD3

3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)

HACD3i

3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)

HACD4

3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)

HACD4i

3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)

HACD5

3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)

HACD5i

3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)

HACD6

3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA)

HACD6i

3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA)

HACD7

3-hydroxyacyl-CoA dehydrogenase (3-oxohexadecanoyl-CoA)

HACD7i

3-hydroxyacyl-CoA dehydrogenase (3-oxohexadecanoyl-CoA)

HACD8

3-hydroxyacyl-CoA dehydrogenase (3-oxooctadecanoyl-CoA), peroxisomal

HACD8i

3-hydroxyacyl-CoA dehydrogenase (3-oxooctadecanoyl-CoA)

HISTD

Histidinol dehydrogenase

HPYRRx

Hydroxypyruvate reductase (NADH)

IDOND

L-idonate 5-dehydrogenase

IMPD

IMP dehydrogenase

IPDPS

1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)

IPMD

3-isopropylmalate dehydrogenase

LALDO2x

D-Lactaldehyde:NAD+ 1-oxidoreductase

LCARR

Lacaldehyde reductase (R-propane-1,2-diol forming)

LCARS

Lacaldehyde reductase (S-propane-1,2-diol forming)

LDH_D

D-lactate dehydrogenase

M1PD

Mannitol-1-phosphate 5-dehydrogenase

MANAO

Mannonate oxidoreductase

MDH

Malate dehydrogenase

ME1

Malic enzyme (NAD)

MECDPDH2

2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase

MMSAD2

Methylmalonate-semialdehyde dehydrogenase (propanol)

MMSAD3

Methylmalonate-semialdehyde dehydrogenase (malonic semialdehyde)

MMTSAO

(S)-Methylmalonate semialdehyde:NAD+ oxidoreductase (CoA-propanoylating)

MTHFR2

5,10-methylenetetrahydrofolate reductase (NADH)

NADDP

NAD diphosphatase

NADH10

NADH dehydrogenase (menaquinone-8 & 0 protons)

NADH16pp

NADH dehydrogenase (ubiquinone-8 & 3 protons) (periplasm)

NADH17pp

NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm)

NADH18pp

NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm)

NADH5

NADH dehydrogenase (ubiquinone-8 )

NADH9

NADH dehydrogenase (demethylmenaquinone-8 & 0 protons)

NADK

NAD kinase

NADN

NAD nucleosidase

NADPPPS

NADP phosphatase

NADS1

NAD synthase (nh3)

NADTRHD

NAD transhydrogenase

NHFRBO

NADH:flavorubredoxin oxidoreductase

NMNAT

Nicotinamide-nucleotide adenylyltransferase

NODOx

Nitric oxide dioxygenase

NTRIR2x

Nitrite Reductase (NADH)

OMMBLHX3

2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (anaerobic)

OMPHHX3

2-octaprenyl-6-methoxyphenol hydroxylase (anaerobic)

OPHHX3

2-Octaprenylphenol hydroxylase (anaerobic)

OXPTNDH_1

None

P5CD

1-pyrroline-5-carboxylate dehydrogenase

PDH

Pyruvate dehydrogenase

PDX5PO2

Pyridoxine 5'-phosphate oxidase (anaerboic

PDX5PS

Pyridoxine 5'-phosphate synthase

PERD

Erythronate 4-phosphate (4per) dehydrogenase

PGCD

Phosphoglycerate dehydrogenase

PPND

Prephenate dehydrogenase

RIBDH

Ribitol-5-phosphate 1-dehydrogenase

SBTPD

Sorbitol-6-phosphate dehydrogenase

SGSAD

Succinylglutamic semialdehyde dehydrogenase

SHCHD2

Sirohydrochlorin dehydrogenase (NAD)

SO3R

Sulfite reductase

SSALx

Succinate-semialdehyde dehydrogenase (NAD)

THD2pp

NAD(P) transhydrogenase (periplasm)

THRD

L-threonine dehydrogenase

TRSARr

Tartronate semialdehyde reductase

UACMAMO

UDP-N-acetyl-D-mannosamine oxidoreductase

UDPACGA6D

UDP-N-acetyl-D-glucosamine 6-dehydrogenase

UDPAPD_2

UDP-N-acetyl-beta-L-pneumosamine dehydrogenase

UDPARMNDH

UDP-N-acetyl-beta-L-rhamnosamine dehydrogenase

UDPGALNAC6DH

UDP-N-acetyl-alpha-D-glucosaminouronate C4-epimerase

UDPGD

UDPglucose 6-dehydrogenase

UDPGDC

UDP-glucuronate C-4'' decarboxylase

URDGLYCD

Ureidoglycolate dehydrogenase