Reaction: BIOMASS_iRR1083_1

Pseudoreaction ?

Descriptive name:

Biomass equation from http://www.biomedcentral.com/1752-0509/3/38

Model:

iYS1720

Reaction:

0.05 5mthf_c + 5e-05 accoa_c + 0.748399 ala__L_c + 0.001 amp_c + 0.130805 arg__L_c + 0.272689 asn__L_c + 0.374015 asp__L_c + 59.964348 atp_c + 6e-06 coa_c + 0.166895 ctp_c + 0.017197 cys__L_c + 0.026137 datp_c + 0.028567 dctp_c + 0.028567 dgtp_c + 0.026137 dttp_c + 1e-05 fad_c + 0.200228 gln__L_c + 0.256058 glu__L_c + 1.498961 gly_c + 0.027476 glycogen_c + 0.186332 gtp_c + 53.303945 h2o_c + 0.067143 his__L_c + 0.087361 ile__L_c + 0.206491 leu__L_c + 0.311404 lys__L_c + 0.104726 met__L_c + 0.00215 nad_c + 5e-05 nadh_c + 0.00013 nadp_c + 0.0004 nadph_c + 0.13874 phe__L_c + 0.256971 pro__L_c + 0.035 ptrc_c + 0.317225 ser__L_c + 0.007 spmd_c + 3e-06 succoa_c + 0.349831 thr__L_c + 0.087887 trp__L_c + 0.040246 tyr__L_c + 0.003 udpg_c + 0.154549 utp_c + 0.284577 val__L_c + 0.000937 colipa_e + 0.049404 peptido_ST_p + 1.4e-05 clpn2_ST_p + 0.00042 pg2_ST_p + 0.000188 12dgr2_ST_p + 0.001531 pe2_ST_p + 4e-06 ps2_ST_p + 4e-06 pa2_ST_p → 59.81 adp_c + 58.266936 h_c + 59.81 pi_c + 0.771532 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.05
5mthf_c
5-Methyltetrahydrofolate
-5e-05
accoa_c
Acetyl-CoA
59.81
adp_c
ADP C10H12N5O10P2
-0.748399
ala__L_c
L-Alanine
-0.001
amp_c
AMP C10H12N5O7P
-0.130805
arg__L_c
L-Arginine
-0.272689
asn__L_c
L-Asparagine
-0.374015
asp__L_c
L-Aspartate
-59.964348
atp_c
ATP C10H12N5O13P3
-6e-06
coa_c
Coenzyme A
-0.166895
ctp_c
CTP C9H12N3O14P3
-0.017197
cys__L_c
L-Cysteine
-0.026137
datp_c
DATP C10H12N5O12P3
-0.028567
dctp_c
DCTP C9H12N3O13P3
-0.028567
dgtp_c
DGTP C10H12N5O13P3
-0.026137
dttp_c
DTTP C10H13N2O14P3
-1e-05
fad_c
Flavin adenine dinucleotide oxidized
-0.200228
gln__L_c
L-Glutamine
-0.256058
glu__L_c
L-Glutamate
-1.498961
gly_c
Glycine
-0.027476
glycogen_c
Glycogen C6H10O5
-0.186332
gtp_c
GTP C10H12N5O14P3
58.266936
h_c
H+
-53.303945
h2o_c
H2O H2O
-0.067143
his__L_c
L-Histidine
-0.087361
ile__L_c
L-Isoleucine
-0.206491
leu__L_c
L-Leucine
-0.311404
lys__L_c
L-Lysine
-0.104726
met__L_c
L-Methionine
-0.00215
nad_c
Nicotinamide adenine dinucleotide
-5e-05
nadh_c
Nicotinamide adenine dinucleotide - reduced
-0.00013
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.0004
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.13874
phe__L_c
L-Phenylalanine
59.81
pi_c
Phosphate
0.771532
ppi_c
Diphosphate
-0.256971
pro__L_c
L-Proline
-0.035
ptrc_c
Putrescine
-0.317225
ser__L_c
L-Serine
-0.007
spmd_c
Spermidine
-3e-06
succoa_c
Succinyl-CoA
-0.349831
thr__L_c
L-Threonine
-0.087887
trp__L_c
L-Tryptophan
-0.040246
tyr__L_c
L-Tyrosine
-0.003
udpg_c
UDPglucose
-0.154549
utp_c
UTP C9H11N2O15P3
-0.284577
val__L_c
L-Valine
-0.000937
colipa_e
Core oligosaccharide lipid A
-0.049404
peptido_ST_p
Membrane murein mixture
-1.4e-05
clpn2_ST_p
Membrane cardiolipin mixture
-0.00042
pg2_ST_p
Membrane phosphatidylglycerol mixture
-0.000188
12dgr2_ST_p
Membrane 1,2-diacylglycerol mixture
-0.001531
pe2_ST_p
Membrane phosphatidylethanolamine mixture
-4e-06
ps2_ST_p
Membrane phosphatidylserine mixture
-4e-06
pa2_ST_p
Membrane phosphatidate mixture

Default bounds:

(0.0, 1000.0)

Objective coefficient:

1.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:


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Universal reaction ?

External database links

Old identifiers

    BIOMASS_iRR1083

BIOMASS_iRR1083_1 in other models