Reaction: BIOMASS_invivo

Pseudoreaction ?

Descriptive name:

Biomass equation adapted to in vivo conditions

Model:

iYS1720

Reaction:

0.000223 10fthf_c + 5e-05 accoa_c + 0.000223 amet_c + 0.001 amp_c + 48.46244 atp_c + 0.004737 ca2_c + 0.004737 cl_c + 6e-06 coa_c + 0.003158 cobalt2_c + 0.166895 ctp_c + 0.003158 cu2_c + 0.026137 datp_c + 0.028567 dctp_c + 0.028567 dgtp_c + 0.026137 dttp_c + 1e-05 fad_c + 0.007106 fe2_c + 0.186332 gtp_c + 41.802037 h2o_c + 0.1776 k_c + 0.007895 mg2_c + 0.000223 mlthf_c + 0.003158 mn2_c + 0.003158 mobd_c + 0.00215 nad_c + 5e-05 nadh_c + 0.00013 nadp_c + 0.0004 nadph_c + 0.011843 nh4_c + 0.000223 pheme_c + 0.035 ptrc_c + 0.000223 pydx5p_c + 0.000223 q8_c + 0.000223 ribflv_c + 0.003948 so4_c + 3e-06 succoa_c + 0.000223 thf_c + 0.000223 thmpp_c + 5.5e-05 udcpdp_c + 0.003 udpg_c + 0.154549 utp_c + 0.003158 zn2_c + 0.02975 gthrd_p + 0.049404 peptido_ST_p + 1.4e-05 clpn2_ST_p + 0.00042 pg2_ST_p + 0.000188 12dgr2_ST_p + 0.001531 pe2_ST_p + 4e-06 ps2_ST_p + 4e-06 pa2_ST_p + peptide_c + 0.000937 colipaOAmin_e + 1e-07 eca4colipamin_e → 48.308092 adp_c + 46.765028 h_c + 48.308092 pi_c + 0.771532 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-5e-05
accoa_c
Acetyl-CoA
48.308092
adp_c
ADP C10H12N5O10P2
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.001
amp_c
AMP C10H12N5O7P
-48.46244
atp_c
ATP C10H12N5O13P3
-0.004737
ca2_c
Calcium
-0.004737
cl_c
Chloride
-6e-06
coa_c
Coenzyme A
-0.003158
cobalt2_c
Co2+
-0.166895
ctp_c
CTP C9H12N3O14P3
-0.003158
cu2_c
Copper
-0.026137
datp_c
DATP C10H12N5O12P3
-0.028567
dctp_c
DCTP C9H12N3O13P3
-0.028567
dgtp_c
DGTP C10H12N5O13P3
-0.026137
dttp_c
DTTP C10H13N2O14P3
-1e-05
fad_c
Flavin adenine dinucleotide oxidized
-0.007106
fe2_c
Fe2+ mitochondria
-0.186332
gtp_c
GTP C10H12N5O14P3
46.765028
h_c
H+
-41.802037
h2o_c
H2O H2O
-0.1776
k_c
Potassium
-0.007895
mg2_c
Magnesium
-0.000223
mlthf_c
5,10-Methylenetetrahydrofolate
-0.003158
mn2_c
Manganese
-0.003158
mobd_c
Molybdate
-0.00215
nad_c
Nicotinamide adenine dinucleotide
-5e-05
nadh_c
Nicotinamide adenine dinucleotide - reduced
-0.00013
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.0004
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.011843
nh4_c
Ammonium
-0.000223
pheme_c
Protoheme C34H30FeN4O4
48.308092
pi_c
Phosphate
0.771532
ppi_c
Diphosphate
-0.035
ptrc_c
Putrescine
-0.000223
pydx5p_c
Pyridoxal 5'-phosphate
-0.000223
q8_c
Ubiquinone-8
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.003948
so4_c
Sulfate
-3e-06
succoa_c
Succinyl-CoA
-0.000223
thf_c
5,6,7,8-Tetrahydrofolate
-0.000223
thmpp_c
Thiamine diphosphate
-5.5e-05
udcpdp_c
Undecaprenyl diphosphate
-0.003
udpg_c
UDPglucose
-0.154549
utp_c
UTP C9H11N2O15P3
-0.003158
zn2_c
Zinc
-0.02975
gthrd_p
Reduced glutathione
-0.049404
peptido_ST_p
Membrane murein mixture
-1.4e-05
clpn2_ST_p
Membrane cardiolipin mixture
-0.00042
pg2_ST_p
Membrane phosphatidylglycerol mixture
-0.000188
12dgr2_ST_p
Membrane 1,2-diacylglycerol mixture
-0.001531
pe2_ST_p
Membrane phosphatidylethanolamine mixture
-4e-06
ps2_ST_p
Membrane phosphatidylserine mixture
-4e-06
pa2_ST_p
Membrane phosphatidate mixture
-1.0
peptide_c
TRNA charged with amino acids for peptide synthesis
-0.000937
colipaOAmin_e
Membrane LPS mixture min
-1e-07
eca4colipamin_e
Enterobacterial-common-antigen-x4-minimal core-oligosaccharide-lipid-A

Default bounds:

(0.0, 1000.0)

Objective coefficient:

0.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:


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Universal reaction ?

External database links

Old identifiers

    biomass_invivo

BIOMASS_invivo in other models