Reaction: BIOMASS_Ec_SynAuto_1

Pseudoreaction ?

Descriptive name:

Autotrophic Biomass Growth

Model:

iSynCJ816

Reaction:

0.000223 10fthf_c + 0.000223 5mthf_c + 0.000279 accoa_c + 0.000223 adocbl_c + 0.39075 ala__L_c + 0.000223 amet_c + 0.23195 arg__L_c + 0.18658 asn__L_c + 0.23149 asp__L_c + 53.4862 atp_c + 0.004512 ca2_c + 0.000223 chor_c + 0.0001675 coa_c + 0.0030293 cobalt2_c + 0.1241 ctp_c + 0.003008 cu2_c + 0.045834 cys__L_c + 0.026311 datp_c + 0.024022 dctp_c + 0.024092 dgtp_c + 0.026402 dttp_c + 0.0002233 fad_c + 0.006816 fe2_c + 0.006816 fe3_c + 0.25602 gln__L_c + 0.27871 glu__L_c + 0.33982 gly_c + 0.21031 glycogen_c + 0.000223 gthrd_c + 0.13259 gtp_c + 48.7499 h2o_c + 0.000223 hemeO_c + 0.085649 his__L_c + 0.28889 ile__L_c + 0.1692 k_c + 0.52501 leu__L_c + 0.025228 lipidAds_c + 0.1926 lys__L_c + 3.1267e-05 malcoa_c + 0.090279 met__L_c + 0.0075733 mg2_c + 0.0002233 mlthf_c + 0.003029 mn2_c + 0.0030293 mobd_c + 0.003787 na1_c + 0.0017867 nad_c + 4.4667e-05 nadh_c + 0.00011167 nadp_c + 0.000335 nadph_c + 0.01136 nh4_c + 0.0079965 pg160_c + 0.00013632 pg161_c + 0.00027416 pg180_c + 0.00051025 pg181_c + 0.18473 phe__L_c + 0.00022333 pheme_c + 0.23611 pro__L_c + 0.03327 ptrc_c + 0.00022333 ribflv_c + 0.26713 ser__L_c + 0.003787 so4_c + 0.0067443 spmd_c + 9.8267e-05 succoa_c + 0.00022333 thf_c + 0.25278 thr__L_c + 0.071297 trp__L_c + 0.13426 tyr__L_c + 5.353e-05 udcpdp_c + 0.13735 utp_c + 0.31019 val__L_c + 0.003008 zn2_c + 0.000223 hemeA_c + 0.0034222 caro_c + 0.0029056 zeax_c + 0.0025182 echin_c + 0.021191 cholphya_c + 0.030329 mgdg160_c + 0.020767 dgdg160_c + 0.0017653 mgdg161_c + 0.0015338 dgdg161_c + 7.8137e-05 mgdg180_c + 0.0003552 dgdg180_c + 0.00072349 mgdg181_c + 0.00046418 dgdg181_c + 0.00072349 mgdg181_9_c + 0.00046418 dgdg181_9_c + 0.0096572 mgdg182_9_12_c + 0.0053017 dgdg182_9_12_c + 0.014397 mgdg183_6_9_12_c + 0.011532 dgdg183_6_9_12_c + 7.2349e-05 mgdg183_9_12_15_c + 0.00015136 dgdg183_9_12_15_c + 0.00043409 mgdg184_6_9_12_15_c + 0.00062563 dgdg184_6_9_12_15_c + 0.0016142 gcarote_c + 0.00051025 pg181_9_c + 0.0051823 pg182_9_12_c + 1e-06 pg183_6_9_12_c + 0.0012947 pg183_9_12_15_c + 1e-06 pg184_6_9_12_15_c + 0.023887 sqdg160_c + 0.0027596 sqdg161_c + 0.00025246 sqdg183_6_9_12_c + 0.00052434 sqdg180_c + 0.0030684 sqdg181_c + 0.0030684 sqdg181_9_c + 0.0081564 sqdg182_9_12_c + 0.00034956 sqdg183_9_12_15_c + 1e-06 sqdg184_6_9_12_15_c + 1.4478e-05 gtocophe_c + 0.00026324 avite1_c + 0.00022376 dtocophe_c + 1.4478e-05 bvite_c + 0.0016444 phllqne_c + 0.025228 e11_p → 53.35 adp_c + 53.35 h_c + 53.3462 pi_c + 0.63107 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-0.000223
5mthf_c
5-Methyltetrahydrofolate
-0.000279
accoa_c
Acetyl-CoA
-0.000223
adocbl_c
Adenosylcobalamin
53.35
adp_c
ADP C10H12N5O10P2
-0.39075
ala__L_c
L-Alanine
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.23195
arg__L_c
L-Arginine
-0.18658
asn__L_c
L-Asparagine
-0.23149
asp__L_c
L-Aspartate
-53.4862
atp_c
ATP C10H12N5O13P3
-0.004512
ca2_c
Calcium
-0.000223
chor_c
Chorismate
-0.0001675
coa_c
Coenzyme A
-0.0030293
cobalt2_c
Co2+
-0.1241
ctp_c
CTP C9H12N3O14P3
-0.003008
cu2_c
Copper
-0.045834
cys__L_c
L-Cysteine
-0.026311
datp_c
DATP C10H12N5O12P3
-0.024022
dctp_c
DCTP C9H12N3O13P3
-0.024092
dgtp_c
DGTP C10H12N5O13P3
-0.026402
dttp_c
DTTP C10H13N2O14P3
-0.0002233
fad_c
Flavin adenine dinucleotide oxidized
-0.006816
fe2_c
Fe2+ mitochondria
-0.006816
fe3_c
Iron (Fe3+)
-0.25602
gln__L_c
L-Glutamine
-0.27871
glu__L_c
L-Glutamate
-0.33982
gly_c
Glycine
-0.21031
glycogen_c
Glycogen C6H10O5
-0.000223
gthrd_c
Reduced glutathione
-0.13259
gtp_c
GTP C10H12N5O14P3
53.35
h_c
H+
-48.7499
h2o_c
H2O H2O
-0.000223
hemeO_c
Heme O C49H56FeN4O5
-0.085649
his__L_c
L-Histidine
-0.28889
ile__L_c
L-Isoleucine
-0.1692
k_c
Potassium
-0.52501
leu__L_c
L-Leucine
-0.025228
lipidAds_c
Lipid A Disaccharide
-0.1926
lys__L_c
L-Lysine
-3.1267e-05
malcoa_c
Malonyl CoA C24H33N7O19P3S
-0.090279
met__L_c
L-Methionine
-0.0075733
mg2_c
Magnesium
-0.0002233
mlthf_c
5,10-Methylenetetrahydrofolate
-0.003029
mn2_c
Manganese
-0.0030293
mobd_c
Molybdate
-0.003787
na1_c
Sodium
-0.0017867
nad_c
Nicotinamide adenine dinucleotide
-4.4667e-05
nadh_c
Nicotinamide adenine dinucleotide - reduced
-0.00011167
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.000335
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.01136
nh4_c
Ammonium
-0.0079965
pg160_c
Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
-0.00013632
pg161_c
Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)
-0.00027416
pg180_c
Phosphatidylglycerol (dioctadecanoyl, n-C18:0)
-0.00051025
pg181_c
Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)
-0.18473
phe__L_c
L-Phenylalanine
-0.00022333
pheme_c
Protoheme C34H30FeN4O4
53.3462
pi_c
Phosphate
0.63107
ppi_c
Diphosphate
-0.23611
pro__L_c
L-Proline
-0.03327
ptrc_c
Putrescine
-0.00022333
ribflv_c
Riboflavin C17H20N4O6
-0.26713
ser__L_c
L-Serine
-0.003787
so4_c
Sulfate
-0.0067443
spmd_c
Spermidine
-9.8267e-05
succoa_c
Succinyl-CoA
-0.00022333
thf_c
5,6,7,8-Tetrahydrofolate
-0.25278
thr__L_c
L-Threonine
-0.071297
trp__L_c
L-Tryptophan
-0.13426
tyr__L_c
L-Tyrosine
-5.353e-05
udcpdp_c
Undecaprenyl diphosphate
-0.13735
utp_c
UTP C9H11N2O15P3
-0.31019
val__L_c
L-Valine
-0.003008
zn2_c
Zinc
-0.000223
hemeA_c
Heme A C49H55FeN4O6
-0.0034222
caro_c
Beta-Carotene
-0.0029056
zeax_c
Zeaxanthin
-0.0025182
echin_c
Echinenone
-0.021191
cholphya_c
Chlorophyll a
-0.030329
mgdg160_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C16)
-0.020767
dgdg160_c
Digalactosyl-diacylglycerol(n-C16)
-0.0017653
mgdg161_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C16 1)
-0.0015338
dgdg161_c
Digalactosyl-diacylglycerol(n-C16 1)
-7.8137e-05
mgdg180_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C18 0)
-0.0003552
dgdg180_c
Digalactosyl-diacylglycerol(n-C18 0)
-0.00072349
mgdg181_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C18 1)
-0.00046418
dgdg181_c
Digalactosyl-diacylglycerol(n-C18 1)
-0.00072349
mgdg181_9_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C18 1)
-0.00046418
dgdg181_9_c
Digalactosyl-diacylglycerol(n-C18 1)
-0.0096572
mgdg182_9_12_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C18 2)
-0.0053017
dgdg182_9_12_c
Digalactosyl-diacylglycerol(n-C18 2)
-0.014397
mgdg183_6_9_12_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C18 3)
-0.011532
dgdg183_6_9_12_c
Digalactosyl-diacylglycerol(n-C18 3)
-7.2349e-05
mgdg183_9_12_15_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C18 3)
-0.00015136
dgdg183_9_12_15_c
Digalactosyl-diacylglycerol(n-C18 3)
-0.00043409
mgdg184_6_9_12_15_c
1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol (n-C18 4)
-0.00062563
dgdg184_6_9_12_15_c
Digalactosyl-diacylglycerol(n-C18 4)
-0.0016142
gcarote_c
Gamma-Carotene
-0.00051025
pg181_9_c
Phosphatidylglycerol (dioctadec-9-enoyl, n-C18 1)
-0.0051823
pg182_9_12_c
Phosphatidylglycerol (dioctadec-9-12-dienoyl, n-C18 2)
-1e-06
pg183_6_9_12_c
Phosphatidylglycerol (dioctadec-6-9-12-trienoyl, n-C18 3)
-0.0012947
pg183_9_12_15_c
Phosphatidylglycerol (dioctadec-9-12-15-trienoyl, n-C18 3)
-1e-06
pg184_6_9_12_15_c
Phosphatidylglycerol (dioctadec-6-9-12-15-tetraenoyl, n-C18 4)
-0.023887
sqdg160_c
Sulfoquinovosyldiacylglycerol (n-C16 0)
-0.0027596
sqdg161_c
Sulfoquinovosyldiacylglycerol (n-C16 1)
-0.00025246
sqdg183_6_9_12_c
Sulfoquinovosyldiacylglycerol (n-C18 3)
-0.00052434
sqdg180_c
Sulfoquinovosyldiacylglycerol (n-C18 0)
-0.0030684
sqdg181_c
Sulfoquinovosyldiacylglycerol (n-C18 1)
-0.0030684
sqdg181_9_c
Sulfoquinovosyldiacylglycerol (n-C18 1)
-0.0081564
sqdg182_9_12_c
Sulfoquinovosyldiacylglycerol (n-C18 2)
-0.00034956
sqdg183_9_12_15_c
Sulfoquinovosyldiacylglycerol (n-C18 3)
-1e-06
sqdg184_6_9_12_15_c
Sulfoquinovosyldiacylglycerol (n-C18 4)
-1.4478e-05
gtocophe_c
Gamma-Tocopherol
-0.00026324
avite1_c
Alpha-Tocopherol
-0.00022376
dtocophe_c
Delta-Tocopherol
-1.4478e-05
bvite_c
Beta-Tocopherol
-0.0016444
phllqne_c
Phylloquinone
-0.025228
e11_p
Peptidoglycan

Default bounds:

(0.0, 999999.0)

Objective coefficient:

0.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:


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Universal reaction ?

External database links

Old identifiers

    Ec_biomass_SynAuto

BIOMASS_Ec_SynAuto_1 in other models