Reaction: BIOMASS_KT2440_WT3

Pseudoreaction ?

Descriptive name:

Biomass P putida KT2440 aa DNA RNA ATP murein FA ions soluble

Model:

iJN1463

Reaction:

0.000223 10fthf_c + 0.000223 2fe2s_c + 0.000223 4fe4s_c + 0.000223 5mthf_c + 0.000279 accoa_c + 0.000223 adocbl_c + 0.598267 ala__L_c + 0.000223 amet_c + 0.354251 arg__L_c + 0.158931 asn__L_c + 0.284685 asp__L_c + 46.918883 atp_c + 0.000223 bmocogdp_c + 0.004226 ca2_c + 0.000223 chor_c + 0.004226 cl_c + 0.000167 coa_c + 0.002817 cobalt2_c + 0.00041 cpe160_c + 0.000226 cpg160_c + 0.159783 ctp_c + 0.002817 cu2_c + 0.055652 cys__L_c + 0.010804 datp_c + 0.01721 dctp_c + 0.017423 dgtp_c + 0.010854 dttp_c + 0.000223 fad_c + 0.00634 fe2_c + 0.00634 fe3_c + 0.251507 gln__L_c + 0.301809 glu__L_c + 0.431309 gly_c + 0.000223 gthrd_c + 0.210704 gtp_c + 41.397362 h2o_c + 0.000223 hemeO_c + 0.126289 his__L_c + 0.244551 ile__L_c + 0.158509 k_c + 0.628769 leu__L_c + 0.000223 lipopb_c + 0.180336 lys__L_c + 3.1e-05 malcoa_c + 0.122008 met__L_c + 0.007044 mg2_c + 0.000223 mlthf_c + 0.002817 mn2_c + 0.002817 mobd_c + 0.000223 mocogdp_c + 0.003522 na1_c + 0.001786 nad_c + 4.4e-05 nadh_c + 0.000111 nadp_c + 0.000335 nadph_c + 0.010567 nh4_c + 0.002817 ni2_c + 0.000251 pe140_c + 0.007882 pe160_c + 0.039155 pe161_c + 0.002622 pe180_c + 0.017845 pe181_c + 0.000138 pg140_c + 0.004354 pg160_c + 0.021632 pg161_c + 0.001449 pg180_c + 0.009859 pg181_c + 0.191038 phe__L_c + 0.000223 pheme_c + 0.26328 pro__L_c + 0.03327 ptrc_c + 0.000223 pydx5p_c + 0.000223 q8h2_c + 0.000223 ribflv_c + 0.301274 ser__L_c + 0.000223 sheme_c + 0.003522 so4_c + 9.8e-05 succoa_c + 0.000223 thf_c + 0.000223 thmnp_c + 0.000223 thmpp_c + 0.256324 thr__L_c + 0.077592 trp__L_c + 0.135921 tyr__L_c + 5.5e-05 udcpdp_c + 0.143215 utp_c + 0.389034 val__L_c + 0.002817 zn2_c + 1.8e-05 clpn140_p + 0.000578 clpn160_p + 0.002873 clpn161_p + 0.000192 clpn180_p + 0.001309 clpn181_p + 0.001979 murein3p3p_p + 0.000326 murein3px4p_p + 0.007917 murein4p4p_p + 0.002941 murein4px4p_p + 6.6e-05 murein4px4px4p_p + 0.000223 btamp_c + 0.000223 pqqh2_c + 0.008696 lpspput_e + 0.000223 pyovd_kt_e → 46.7502 adp_c + 46.7502 h_c + 46.746677 pi_c + 0.73868 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-0.000223
2fe2s_c
[2Fe-2S] iron-sulfur cluster
-0.000223
4fe4s_c
[4Fe-4S] iron-sulfur cluster
-0.000223
5mthf_c
5-Methyltetrahydrofolate
-0.000279
accoa_c
Acetyl-CoA
-0.000223
adocbl_c
Adenosylcobalamin
46.7502
adp_c
ADP C10H12N5O10P2
-0.598267
ala__L_c
L-Alanine
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.354251
arg__L_c
L-Arginine
-0.158931
asn__L_c
L-Asparagine
-0.284685
asp__L_c
L-Aspartate
-46.918883
atp_c
ATP C10H12N5O13P3
-0.000223
bmocogdp_c
Bis-molybdopterin guanine dinucleotide
-0.004226
ca2_c
Calcium
-0.000223
chor_c
Chorismate
-0.004226
cl_c
Chloride
-0.000167
coa_c
Coenzyme A
-0.002817
cobalt2_c
Co2+
-0.00041
cpe160_c
Cyclopropane phosphatidylethanolamine (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)
-0.000226
cpg160_c
Cyclopropane phosphatidylglycerol (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)
-0.159783
ctp_c
CTP C9H12N3O14P3
-0.002817
cu2_c
Copper
-0.055652
cys__L_c
L-Cysteine
-0.010804
datp_c
DATP C10H12N5O12P3
-0.01721
dctp_c
DCTP C9H12N3O13P3
-0.017423
dgtp_c
DGTP C10H12N5O13P3
-0.010854
dttp_c
DTTP C10H13N2O14P3
-0.000223
fad_c
Flavin adenine dinucleotide oxidized
-0.00634
fe2_c
Fe2+ mitochondria
-0.00634
fe3_c
Iron (Fe3+)
-0.251507
gln__L_c
L-Glutamine
-0.301809
glu__L_c
L-Glutamate
-0.431309
gly_c
Glycine
-0.000223
gthrd_c
Reduced glutathione
-0.210704
gtp_c
GTP C10H12N5O14P3
46.7502
h_c
H+
-41.397362
h2o_c
H2O H2O
-0.000223
hemeO_c
Heme O C49H56FeN4O5
-0.126289
his__L_c
L-Histidine
-0.244551
ile__L_c
L-Isoleucine
-0.158509
k_c
Potassium
-0.628769
leu__L_c
L-Leucine
-0.000223
lipopb_c
Lipoate (protein bound)
-0.180336
lys__L_c
L-Lysine
-3.1e-05
malcoa_c
Malonyl CoA C24H33N7O19P3S
-0.122008
met__L_c
L-Methionine
-0.007044
mg2_c
Magnesium
-0.000223
mlthf_c
5,10-Methylenetetrahydrofolate
-0.002817
mn2_c
Manganese
-0.002817
mobd_c
Molybdate
-0.000223
mocogdp_c
Molybdopterin guanine dinucleotide
-0.003522
na1_c
Sodium
-0.001786
nad_c
Nicotinamide adenine dinucleotide
-4.4e-05
nadh_c
Nicotinamide adenine dinucleotide - reduced
-0.000111
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.000335
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.010567
nh4_c
Ammonium
-0.002817
ni2_c
Nickel
-0.000251
pe140_c
Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)
-0.007882
pe160_c
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.039155
pe161_c
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.002622
pe180_c
Phosphatidylethanolamine (dioctadecanoyl, n-C18:0)
-0.017845
pe181_c
Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)
-0.000138
pg140_c
Phosphatidylglycerol (ditetradecanoyl, n-C14:0)
-0.004354
pg160_c
Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
-0.021632
pg161_c
Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)
-0.001449
pg180_c
Phosphatidylglycerol (dioctadecanoyl, n-C18:0)
-0.009859
pg181_c
Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)
-0.191038
phe__L_c
L-Phenylalanine
-0.000223
pheme_c
Protoheme C34H30FeN4O4
46.746677
pi_c
Phosphate
0.73868
ppi_c
Diphosphate
-0.26328
pro__L_c
L-Proline
-0.03327
ptrc_c
Putrescine
-0.000223
pydx5p_c
Pyridoxal 5'-phosphate
-0.000223
q8h2_c
Ubiquinol-8
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.301274
ser__L_c
L-Serine
-0.000223
sheme_c
Siroheme C42H36FeN4O16
-0.003522
so4_c
Sulfate
-9.8e-05
succoa_c
Succinyl-CoA
-0.000223
thf_c
5,6,7,8-Tetrahydrofolate
-0.000223
thmnp_c
Tetrahydromonapterin
-0.000223
thmpp_c
Thiamine diphosphate
-0.256324
thr__L_c
L-Threonine
-0.077592
trp__L_c
L-Tryptophan
-0.135921
tyr__L_c
L-Tyrosine
-5.5e-05
udcpdp_c
Undecaprenyl diphosphate
-0.143215
utp_c
UTP C9H11N2O15P3
-0.389034
val__L_c
L-Valine
-0.002817
zn2_c
Zinc
-1.8e-05
clpn140_p
Cardiolipin (tetratetradecanoyl, n-C14:0)
-0.000578
clpn160_p
Cardiolipin (tetrahexadecanoyl, n-C16:0)
-0.002873
clpn161_p
Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)
-0.000192
clpn180_p
Cardiolipin (tetraoctadecanoyl, n-C18:0)
-0.001309
clpn181_p
Cardiolipin (tetraoctadec-11-enoyl, n-C18:1)
-0.001979
murein3p3p_p
Two linked disacharide tripeptide murein units (uncrosslinked, middle of chain)
-0.000326
murein3px4p_p
Two disacharide linked murein units, tripeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.007917
murein4p4p_p
Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)
-0.002941
murein4px4p_p
Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-6.6e-05
murein4px4px4p_p
Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)
-0.000223
btamp_c
Biotinyl 5 AMP C20H27N7O9PS
-0.000223
pqqh2_c
Reduced pyrroloquinoline-quinone
-0.008696
lpspput_e
Lipopolysacharide LPS from P putida KT2440
-0.000223
pyovd_kt_e
Pyoverdine P putida specific

Default bounds:

(0.0, 999999.0)

Objective coefficient:

1.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:


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Universal reaction ?

External database links

Old identifiers

    BiomassKT2440_WT3

BIOMASS_KT2440_WT3 in other models