Reaction: BIOMASS_Ec_iJO1366_WT_53p95M

Pseudoreaction ?

Descriptive name:

E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate

Model:

iUMNK88_1353

Reaction:

0.000223 10fthf_c + 0.000223 2dmmql8_c + 2.5e-05 2fe2s_c + 0.000248 4fe4s_c + 0.000223 5mthf_c + 0.000279 accoa_c + 0.000223 adocbl_c + 0.499149 ala__L_c + 0.000223 amet_c + 0.28742 arg__L_c + 0.234232 asn__L_c + 0.234232 asp__L_c + 54.119975 atp_c + 0.000116 bmocogdp_c + 2e-06 btn_c + 0.004952 ca2_c + 0.000223 chor_c + 0.004952 cl_c + 0.000168 coa_c + 2.4e-05 cobalt2_c + 0.129799 ctp_c + 0.000674 cu2_c + 0.088988 cys__L_c + 0.024805 datp_c + 0.025612 dctp_c + 0.025612 dgtp_c + 0.024805 dttp_c + 0.000223 enter_c + 0.000223 fad_c + 0.006388 fe2_c + 0.007428 fe3_c + 0.255712 gln__L_c + 0.255712 glu__L_c + 0.595297 gly_c + 0.154187 glycogen_c + 0.000223 gthrd_c + 0.209121 gtp_c + 48.752916 h2o_c + 0.000223 hemeO_c + 0.092056 his__L_c + 0.282306 ile__L_c + 0.18569 k_c + 0.437778 leu__L_c + 3e-06 lipopb_c + 0.333448 lys__L_c + 3.1e-05 malcoa_c + 0.149336 met__L_c + 0.008253 mg2_c + 0.000223 mlthf_c + 0.000658 mn2_c + 7e-06 mobd_c + 7e-06 mococdp_c + 7e-06 mocogdp_c + 0.000223 mql8_c + 0.001787 nad_c + 4.5e-05 nadh_c + 0.000112 nadp_c + 0.000335 nadph_c + 0.012379 nh4_c + 0.000307 ni2_c + 0.012366 pe160_c + 0.009618 pe161_c + 0.004957 pe181_c + 0.005707 pg160_c + 0.004439 pg161_c + 0.002288 pg181_c + 0.180021 phe__L_c + 0.000223 pheme_c + 0.214798 pro__L_c + 0.03327 ptrc_c + 0.000223 pydx5p_c + 0.000223 q8h2_c + 0.000223 ribflv_c + 0.209684 ser__L_c + 0.000223 sheme_c + 0.004126 so4_c + 0.006744 spmd_c + 9.8e-05 succoa_c + 0.000223 thf_c + 0.000223 thmpp_c + 0.246506 thr__L_c + 0.055234 trp__L_c + 0.133993 tyr__L_c + 5.5e-05 udcpdp_c + 0.140101 utp_c + 0.411184 val__L_c + 0.000324 zn2_c + 0.008151 colipa_e + 0.002944 clpn160_p + 0.00229 clpn161_p + 0.00118 clpn181_p + 0.001345 murein3p3p_p + 0.000605 murein3px4p_p + 0.005381 murein4p4p_p + 0.005448 murein4px4p_p + 0.000673 murein4px4px4p_p + 0.031798 pe160_p + 0.024732 pe161_p + 0.012747 pe181_p + 0.004892 pg160_p + 0.003805 pg161_p + 0.001961 pg181_p → 53.95 adp_c + 53.95 h_c + 53.945874 pi_c + 0.749831 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-0.000223
2dmmql8_c
2-Demethylmenaquinol 8
-2.5e-05
2fe2s_c
[2Fe-2S] iron-sulfur cluster
-0.000248
4fe4s_c
[4Fe-4S] iron-sulfur cluster
-0.000223
5mthf_c
5-Methyltetrahydrofolate
-0.000279
accoa_c
Acetyl-CoA
-0.000223
adocbl_c
Adenosylcobalamin
53.95
adp_c
ADP C10H12N5O10P2
-0.499149
ala__L_c
L-Alanine
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.28742
arg__L_c
L-Arginine
-0.234232
asn__L_c
L-Asparagine
-0.234232
asp__L_c
L-Aspartate
-54.119975
atp_c
ATP C10H12N5O13P3
-0.000116
bmocogdp_c
Bis-molybdopterin guanine dinucleotide
-2e-06
btn_c
Biotin
-0.004952
ca2_c
Calcium
-0.000223
chor_c
Chorismate
-0.004952
cl_c
Chloride
-0.000168
coa_c
Coenzyme A
-2.4e-05
cobalt2_c
Co2+
-0.129799
ctp_c
CTP C9H12N3O14P3
-0.000674
cu2_c
Copper
-0.088988
cys__L_c
L-Cysteine
-0.024805
datp_c
DATP C10H12N5O12P3
-0.025612
dctp_c
DCTP C9H12N3O13P3
-0.025612
dgtp_c
DGTP C10H12N5O13P3
-0.024805
dttp_c
DTTP C10H13N2O14P3
-0.000223
enter_c
Enterochelin
-0.000223
fad_c
Flavin adenine dinucleotide oxidized
-0.006388
fe2_c
Fe2+ mitochondria
-0.007428
fe3_c
Iron (Fe3+)
-0.255712
gln__L_c
L-Glutamine
-0.255712
glu__L_c
L-Glutamate
-0.595297
gly_c
Glycine
-0.154187
glycogen_c
Glycogen C6H10O5
-0.000223
gthrd_c
Reduced glutathione
-0.209121
gtp_c
GTP C10H12N5O14P3
53.95
h_c
H+
-48.752916
h2o_c
H2O H2O
-0.000223
hemeO_c
Heme O C49H56FeN4O5
-0.092056
his__L_c
L-Histidine
-0.282306
ile__L_c
L-Isoleucine
-0.18569
k_c
Potassium
-0.437778
leu__L_c
L-Leucine
-3e-06
lipopb_c
Lipoate (protein bound)
-0.333448
lys__L_c
L-Lysine
-3.1e-05
malcoa_c
Malonyl CoA C24H33N7O19P3S
-0.149336
met__L_c
L-Methionine
-0.008253
mg2_c
Magnesium
-0.000223
mlthf_c
5,10-Methylenetetrahydrofolate
-0.000658
mn2_c
Manganese
-7e-06
mobd_c
Molybdate
-7e-06
mococdp_c
Molybdopterin cytosine dinucleotide
-7e-06
mocogdp_c
Molybdopterin guanine dinucleotide
-0.000223
mql8_c
Menaquinol 8
-0.001787
nad_c
Nicotinamide adenine dinucleotide
-4.5e-05
nadh_c
Nicotinamide adenine dinucleotide - reduced
-0.000112
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.000335
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.012379
nh4_c
Ammonium
-0.000307
ni2_c
Nickel
-0.012366
pe160_c
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.009618
pe161_c
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.004957
pe181_c
Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)
-0.005707
pg160_c
Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
-0.004439
pg161_c
Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)
-0.002288
pg181_c
Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)
-0.180021
phe__L_c
L-Phenylalanine
-0.000223
pheme_c
Protoheme C34H30FeN4O4
53.945874
pi_c
Phosphate
0.749831
ppi_c
Diphosphate
-0.214798
pro__L_c
L-Proline
-0.03327
ptrc_c
Putrescine
-0.000223
pydx5p_c
Pyridoxal 5'-phosphate
-0.000223
q8h2_c
Ubiquinol-8
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.209684
ser__L_c
L-Serine
-0.000223
sheme_c
Siroheme C42H36FeN4O16
-0.004126
so4_c
Sulfate
-0.006744
spmd_c
Spermidine
-9.8e-05
succoa_c
Succinyl-CoA
-0.000223
thf_c
5,6,7,8-Tetrahydrofolate
-0.000223
thmpp_c
Thiamine diphosphate
-0.246506
thr__L_c
L-Threonine
-0.055234
trp__L_c
L-Tryptophan
-0.133993
tyr__L_c
L-Tyrosine
-5.5e-05
udcpdp_c
Undecaprenyl diphosphate
-0.140101
utp_c
UTP C9H11N2O15P3
-0.411184
val__L_c
L-Valine
-0.000324
zn2_c
Zinc
-0.008151
colipa_e
Core oligosaccharide lipid A
-0.002944
clpn160_p
Cardiolipin (tetrahexadecanoyl, n-C16:0)
-0.00229
clpn161_p
Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)
-0.00118
clpn181_p
Cardiolipin (tetraoctadec-11-enoyl, n-C18:1)
-0.001345
murein3p3p_p
Two linked disacharide tripeptide murein units (uncrosslinked, middle of chain)
-0.000605
murein3px4p_p
Two disacharide linked murein units, tripeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.005381
murein4p4p_p
Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)
-0.005448
murein4px4p_p
Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.000673
murein4px4px4p_p
Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)
-0.031798
pe160_p
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.024732
pe161_p
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.012747
pe181_p
Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)
-0.004892
pg160_p
Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
-0.003805
pg161_p
Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)
-0.001961
pg181_p
Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)

Default bounds:

(0.0, 1000.0)

Objective coefficient:

0.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:

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Universal reaction ?

External database links

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Old identifiers

    Ec_biomass_iJO1366_WT_53p95M

BIOMASS_Ec_iJO1366_WT_53p95M in other models