Universal reaction: BIOMASS_Ec_iJO1366_core_53p95M

Pseudoreaction ?

Descriptive name:

E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate

Reaction:

0.000223 10fthf_c + 2.6e-05 2fe2s_c + 0.000223 2ohph_c + 0.00026 4fe4s_c + 0.513689 ala__L_c + 0.000223 amet_c + 0.295792 arg__L_c + 0.241055 asn__L_c + 0.241055 asp__L_c + 54.124831 atp_c + 0.000122 bmocogdp_c + 2e-06 btn_c + 0.005205 ca2_c + 0.005205 cl_c + 0.000576 coa_c + 2.5e-05 cobalt2_c + 0.133508 ctp_c + 0.000709 cu2_c + 0.09158 cys__L_c + 0.026166 datp_c + 0.027017 dctp_c + 0.027017 dgtp_c + 0.026166 dttp_c + 0.000223 fad_c + 0.006715 fe2_c + 0.007808 fe3_c + 0.26316 gln__L_c + 0.26316 glu__L_c + 0.612638 gly_c + 0.215096 gtp_c + 48.601527 h2o_c + 0.094738 his__L_c + 0.290529 ile__L_c + 0.195193 k_c + 0.450531 leu__L_c + 0.343161 lys__L_c + 0.153686 met__L_c + 0.008675 mg2_c + 0.000223 mlthf_c + 0.000691 mn2_c + 7e-06 mobd_c + 0.001831 nad_c + 0.000447 nadp_c + 0.013013 nh4_c + 0.000323 ni2_c + 0.017868 pe160_c + 0.054154 pe161_c + 0.185265 phe__L_c + 0.000223 pheme_c + 0.221055 pro__L_c + 0.000223 pydx5p_c + 0.000223 ribflv_c + 0.215792 ser__L_c + 0.000223 sheme_c + 0.004338 so4_c + 0.000223 thf_c + 0.000223 thmpp_c + 0.253687 thr__L_c + 0.056843 trp__L_c + 0.137896 tyr__L_c + 5.5e-05 udcpdp_c + 0.144104 utp_c + 0.423162 val__L_c + 0.000341 zn2_c + 0.019456 kdo2lipid4_e + 0.013894 murein5px4p_p + 0.045946 pe160_p + 0.02106 pe161_p ⇌ 53.95 adp_c + 53.95 h_c + 53.945662 pi_c + 0.773903 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-2.6e-05
2fe2s_c
[2Fe-2S] iron-sulfur cluster
-0.000223
2ohph_c
2-Octaprenyl-6-hydroxyphenol
-0.00026
4fe4s_c
[4Fe-4S] iron-sulfur cluster
53.95
adp_c
ADP C10H12N5O10P2
-0.513689
ala__L_c
L-Alanine
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.295792
arg__L_c
L-Arginine
-0.241055
asn__L_c
L-Asparagine
-0.241055
asp__L_c
L-Aspartate
-54.124831
atp_c
ATP C10H12N5O13P3
-0.000122
bmocogdp_c
Bis-molybdopterin guanine dinucleotide
-2e-06
btn_c
Biotin
-0.005205
ca2_c
Calcium
-0.005205
cl_c
Chloride
-0.000576
coa_c
Coenzyme A
-2.5e-05
cobalt2_c
Co2+
-0.133508
ctp_c
CTP C9H12N3O14P3
-0.000709
cu2_c
Copper
-0.09158
cys__L_c
L-Cysteine
-0.026166
datp_c
DATP C10H12N5O12P3
-0.027017
dctp_c
DCTP C9H12N3O13P3
-0.027017
dgtp_c
DGTP C10H12N5O13P3
-0.026166
dttp_c
DTTP C10H13N2O14P3
-0.000223
fad_c
Flavin adenine dinucleotide oxidized
-0.006715
fe2_c
Fe2+ mitochondria
-0.007808
fe3_c
Iron (Fe3+)
-0.26316
gln__L_c
L-Glutamine
-0.26316
glu__L_c
L-Glutamate
-0.612638
gly_c
Glycine
-0.215096
gtp_c
GTP C10H12N5O14P3
53.95
h_c
H+
-48.601527
h2o_c
H2O H2O
-0.094738
his__L_c
L-Histidine
-0.290529
ile__L_c
L-Isoleucine
-0.195193
k_c
Potassium
-0.450531
leu__L_c
L-Leucine
-0.343161
lys__L_c
L-Lysine
-0.153686
met__L_c
L-Methionine
-0.008675
mg2_c
Magnesium
-0.000223
mlthf_c
5,10-Methylenetetrahydrofolate
-0.000691
mn2_c
Manganese
-7e-06
mobd_c
Molybdate
-0.001831
nad_c
Nicotinamide adenine dinucleotide
-0.000447
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.013013
nh4_c
Ammonium
-0.000323
ni2_c
Nickel
-0.017868
pe160_c
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.054154
pe161_c
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.185265
phe__L_c
L-Phenylalanine
-0.000223
pheme_c
Protoheme C34H30FeN4O4
53.945662
pi_c
Phosphate
0.773903
ppi_c
Diphosphate
-0.221055
pro__L_c
L-Proline
-0.000223
pydx5p_c
Pyridoxal 5'-phosphate
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.215792
ser__L_c
L-Serine
-0.000223
sheme_c
Siroheme C42H36FeN4O16
-0.004338
so4_c
Sulfate
-0.000223
thf_c
5,6,7,8-Tetrahydrofolate
-0.000223
thmpp_c
Thiamine diphosphate
-0.253687
thr__L_c
L-Threonine
-0.056843
trp__L_c
L-Tryptophan
-0.137896
tyr__L_c
L-Tyrosine
-5.5e-05
udcpdp_c
Undecaprenyl diphosphate
-0.144104
utp_c
UTP C9H11N2O15P3
-0.423162
val__L_c
L-Valine
-0.000341
zn2_c
Zinc
-0.019456
kdo2lipid4_e
KDO(2)-lipid IV(A)
-0.013894
murein5px4p_p
Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.045946
pe160_p
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.02106
pe161_p
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)

BIOMASS_Ec_iJO1366_core_53p95M in BiGG models:

Organism
Model
Escherichia coli APEC O1
iAPECO1_1312
Escherichia coli BL21(DE3)
iB21_1397
Escherichia coli BW2952
iBWG_1329
Escherichia coli CFT073
ic_1306
Escherichia coli O127:H6 str. E2348/69
iE2348C_1286
Escherichia coli 042
iEC042_1314
Escherichia coli C
iEC1344_C
Escherichia coli ATCC 8739
iEC1349_Crooks
Escherichia coli BL21(DE3)
iEC1356_Bl21DE3
Escherichia coli W
iEC1364_W
Escherichia coli DH5[alpha]
iEC1368_DH5a
Escherichia coli str. K-12 substr. W3110
iEC1372_W3110
Escherichia coli 55989
iEC55989_1330
Escherichia coli ABU 83972
iECABU_c1320
Escherichia coli B str. REL606
iECB_1328
Escherichia coli 'BL21-Gold(DE3)pLysS AG'
iECBD_1354
Escherichia coli BL21(DE3)
iECD_1391
Escherichia coli str. K-12 substr. DH10B
iECDH10B_1368
Escherichia coli DH1
iEcDH1_1363
Escherichia coli DH1
iECDH1ME8569_1439
Escherichia coli O139:H28 str. E24377A
iEcE24377_1341
Escherichia coli ED1a
iECED1_1282
Escherichia coli O157:H7 str. EC4115
iECH74115_1262
Escherichia coli HS
iEcHS_1320
Escherichia coli IAI1
iECIAI1_1343
Escherichia coli IAI39
iECIAI39_1322
Escherichia coli NA114
iECNA114_1301
Escherichia coli O103:H2 str. 12009
iECO103_1326
Escherichia coli O111:H- str. 11128
iECO111_1330
Escherichia coli O26:H11 str. 11368
iECO26_1355
Escherichia coli IHE3034
iECOK1_1307
Escherichia coli ATCC 8739
iEcolC_1368
Escherichia coli 536
iECP_1309
Escherichia coli O157:H7 str. Sakai
iECs_1301
Escherichia coli S88
iECS88_1305
Escherichia coli SE11
iECSE_1348
Escherichia coli SE15
iECSF_1327
Escherichia coli SMS-3-5
iEcSMS35_1347
Escherichia coli O157:H7 str. TW14359
iECSP_1301
Escherichia coli UMN026
iECUMN_1333
Escherichia coli W
iECW_1372
Escherichia coli KO11FL
iEKO11_1354
Escherichia coli ETEC H10407
iETEC_1333
Escherichia coli O55:H7 str. CB9615
iG2583_1286
Escherichia coli str. K-12 substr. MG1655
iJO1366
Escherichia coli LF82
iLF82_1304
Escherichia coli O83:H1 str. NRG 857C
iNRG857_1313
Shigella flexneri 2a str. 2457T
iS_1188
Shigella boydii CDC 3083-94
iSbBS512_1146
Shigella boydii Sb227
iSBO_1134
Shigella dysenteriae Sd197
iSDY_1059
Shigella flexneri 2a str. 301
iSF_1195
Shigella flexneri 5 str. 8401
iSFV_1184
Shigella flexneri 2002017
iSFxv_1172
Shigella sonnei Ss046
iSSON_1240
Escherichia coli UM146
iUMN146_1321
Escherichia coli UMNK88
iUMNK88_1353
Escherichia coli UTI89
iUTI89_1310
Escherichia coli W
iWFL_1372
Escherichia coli str. K-12 substr. W3110
iY75_1357
Escherichia coli O157:H7 str. EDL933
iZ_1308

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Old identifiers

    Ec_biomass_iJO1366_core_53p95M