Reaction: BIOMASS_Ecoli_TM

Pseudoreaction ?

Descriptive name:

Biomass Thermotoga - values taken from iJR904

Model:

iLJ478

Reaction:

0.05 5mthf_c + 5e-05 accoa_c + 0.488 ala__L_c + 0.001 amp_c + 0.281 arg__L_c + 0.458 asp__L_c + 45.7318 atp_c + 6e-06 coa_c + 0.126 ctp_c + 0.087 cys__L_c + 0.0247 datp_c + 0.0254 dctp_c + 0.0254 dgtp_c + 0.0247 dttp_c + 1e-05 fad_c + 0.25 gln__L_c + 0.25 glu__L_c + 0.582 gly_c + 0.154 glycogen_c + 0.203 gtp_c + 45.5608 h2o_c + 0.09 his__L_c + 0.276 ile__L_c + 0.428 leu__L_c + 0.326 lys__L_c + 0.146 met__L_c + 0.00215 nad_c + 5e-05 nadh_c + 0.00013 nadp_c + 0.0004 nadph_c + 0.001398 pa160_c + 0.001398 pgp160_c + 0.176 phe__L_c + 0.21 pro__L_c + 0.035 ptrc_c + 0.205 ser__L_c + 0.007 spmd_c + 3e-06 succoa_c + 0.241 thr__L_c + 0.054 trp__L_c + 0.131 tyr__L_c + 0.001398 udcpdp_c + 0.136 utp_c + 0.402 val__L_c + 0.003495 TM_GL1_c + 0.003495 TM_GL2_c + 0.001398 dmosACP_c + 0.001398 dmtaACP_c + 0.0276 peptido_TM_c → 45.5608 adp_c + 45.56035 h_c + 45.5628 pi_c + 0.7302 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.05
5mthf_c
5-Methyltetrahydrofolate
-5e-05
accoa_c
Acetyl-CoA
45.5608
adp_c
ADP C10H12N5O10P2
-0.488
ala__L_c
L-Alanine
-0.001
amp_c
AMP C10H12N5O7P
-0.281
arg__L_c
L-Arginine
-0.458
asp__L_c
L-Aspartate
-45.7318
atp_c
ATP C10H12N5O13P3
-6e-06
coa_c
Coenzyme A
-0.126
ctp_c
CTP C9H12N3O14P3
-0.087
cys__L_c
L-Cysteine
-0.0247
datp_c
DATP C10H12N5O12P3
-0.0254
dctp_c
DCTP C9H12N3O13P3
-0.0254
dgtp_c
DGTP C10H12N5O13P3
-0.0247
dttp_c
DTTP C10H13N2O14P3
-1e-05
fad_c
Flavin adenine dinucleotide oxidized
-0.25
gln__L_c
L-Glutamine
-0.25
glu__L_c
L-Glutamate
-0.582
gly_c
Glycine
-0.154
glycogen_c
Glycogen C6H10O5
-0.203
gtp_c
GTP C10H12N5O14P3
45.56035
h_c
H+
-45.5608
h2o_c
H2O H2O
-0.09
his__L_c
L-Histidine
-0.276
ile__L_c
L-Isoleucine
-0.428
leu__L_c
L-Leucine
-0.326
lys__L_c
L-Lysine
-0.146
met__L_c
L-Methionine
-0.00215
nad_c
Nicotinamide adenine dinucleotide
-5e-05
nadh_c
Nicotinamide adenine dinucleotide - reduced
-0.00013
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.0004
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.001398
pa160_c
1,2-dihexadecanoyl-sn-glycerol 3-phosphate
-0.001398
pgp160_c
Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)
-0.176
phe__L_c
L-Phenylalanine
45.5628
pi_c
Phosphate
0.7302
ppi_c
Diphosphate
-0.21
pro__L_c
L-Proline
-0.035
ptrc_c
Putrescine
-0.205
ser__L_c
L-Serine
-0.007
spmd_c
Spermidine
-3e-06
succoa_c
Succinyl-CoA
-0.241
thr__L_c
L-Threonine
-0.054
trp__L_c
L-Tryptophan
-0.131
tyr__L_c
L-Tyrosine
-0.001398
udcpdp_c
Undecaprenyl diphosphate
-0.136
utp_c
UTP C9H11N2O15P3
-0.402
val__L_c
L-Valine
-0.003495
TM_GL1_c
Thermotoga maritima glycolipid 1
-0.003495
TM_GL2_c
Thermotoga maritima glycolipid 2
-0.001398
dmosACP_c
13,14-Dimethyloctacosanedioic acid ACP (C30:0 ACP)
-0.001398
dmtaACP_c
15,16-Dimethyltriacontanedioic acid ACP (C32:0 ACP)
-0.0276
peptido_TM_c
Peptidoglycan subunit of Thermotoga maritima

Default bounds:

(0.0, 1000.0)

Objective coefficient:

1.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:


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Universal reaction ?

External database links

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Old identifiers

    BiomassEcoli_TM

BIOMASS_Ecoli_TM in other models