Universal reaction: BIOMASS_WT_lumped

Pseudoreaction ?

Descriptive name:

Reaction:

0.000223 10fthf_c + 1.22133333333333e-06 25aics_c + 2.5e-05 2fe2s_c + 0.000248 4fe4s_c + 0.000223 5mthf_c + 0.000251158 accoa_c + 0.00326733653519446 adp_c + 0.000118894666666667 adprib_c + 4.07473333333333e-05 aicar_c + 4.28646666666667e-05 air_c + 0.423632460532057 alatrna_c + 0.000911653304681671 amp_c + 0.0918089359638714 argtrna_c + 0.197581628673794 asntrna_c + 0.218521086057564 asptrna_c + 0.145790969008564 atp_c + 2e-06 btn_c + 0.000832021974702629 cdp_c + 0.000223 chor_c + 0.004952 cl_c + 0.000600864756467935 cmp_c + 0.000221609784860776 coa_c + 0.066756388073929 ctp_c + 0.0209808370736605 cystrna_c + 1.20343333333333e-05 dadp_c + 4.61533333333333e-06 damp_c + 0.0322157042402594 datp_c + 1.35283333333333e-05 dcdp_c + 1.673e-06 dcmp_c + 0.0172721560415041 dctp_c + 0.000109048 dgdp_c + 1e-06 dgmp_c + 0.0149650961239284 dgtp_c + 4.23666666666667e-06 didp_c + 7.46e-07 dimp_c + 8.7751e-05 dtdp_c + 0.0342907422630927 dttp_c + 1.9085e-05 e4p_c + 0.0107578645424233 f6p_c + 4.36053333333333e-05 fad_c + 0.00302503809888867 fdp_c + 0.006388 fe2_c + 0.007428 fe3_c + 1.53733333333333e-05 fmn_c + 0.00656510781868268 g6p_c + 1.01913333333333e-05 gar_c + 0.000140997483565739 gdp_c + 0.126949548237883 glntrna_c + 0.236004222544405 glutrna_c + 0.489884461815628 glytrna_c + 1e-06 gmp_c + 0.0717413508690766 gtp_c + 0.000223 hemeO_c + 0.0602470691980932 histrna_c + 0.265788828846867 iletrna_c + 0.00082713918858427 imp_c + 0.18569 k_c + 0.296137663627832 leutrna_c + 3e-06 lipopb_c + 0.233693369812558 lystrna_c + 0.000143479333333333 malcoa_c + 0.0760398364143866 mettrna_c + 0.008253 mg2_c + 0.000658 mn2_c + 7e-06 mobd_c + 1.9895 na1_c + 1.09973333333333e-05 nad_c + 1.83333333333333e-07 nadh_c + 3.29583333333333e-05 nadp_c + 4.0375e-05 nadph_c + 0.012379 nh4_c + 0.000223 pheme_c + 0.114289649962229 phetrna_c + 2.39666666666667e-07 pram_c + 0.149974972042654 protrna_c + 0.000192739333333333 prpp_c + 0.03327 ptrc_c + 1.6527e-05 rbflvrd_c + 0.000223 ribflv_c + 0.000204374 s17bp_c + 4.1923e-05 s7p_c + 0.255601998781001 sertrna_c + 0.004126 so4_c + 5.23233333333333e-06 succoa_c + 0.000223 thm_c + 0.000223 thmpp_c + 0.217278545237938 thrtrna_c + 0.0153399263561257 trptrna_c + 0.0762944062187949 tyrtrna_c + 0.000386460666666667 uacgam_c + 1.23583333333333e-05 uacmam_c + 1.07153333333333e-05 uama_c + 6.32866666666667e-06 uamag_c + 0.000181107333333333 uamr_c + 0.000231240333333333 udcpp_c + 0.000930858135601723 udp_c + 0.000177274 udpg_c + 0.00249409889766259 ump_c + 0.118289050266337 utp_c + 0.286922001834538 valtrna_c + 0.000324 zn2_c + 0.000440383666666667 cdpglyc_c + 0.00493631043718319 mqn7_c + 0.00262322198280426 3g12dgr_MRSA_c + 0.00114134054982119 LTA_MRSA_w + 0.00874624310832839 WTA40rPG_w + 0.00831380373939899 WTA40raPG_w + 0.00762327685818712 WTA40rgPG_w + 0.00286984353246381 clpn_MRSA_c + 0.0109370901007626 dag_MRSA_c + 0.0212090493892501 pg_MRSA_c + 0.00236326444528039 pglys_MRSA_c + 7.73333333333333e-08 uamagl_c + 1.3655e-05 uamaglaa_c ⇌ 0.423632460532057 trnaala_c + 0.0918089359638714 trnaarg_c + 0.197581628673794 trnaasn_c + 0.218521086057564 trnaasp_c + 0.0209808370736605 trnacys_c + 0.362953770782288 trnaglu_c + 0.489884461815628 trnagly_c + 0.0602470691980932 trnahis_c + 0.265788828846867 trnaile_c + 0.296137663627832 trnaleu_c + 0.233693369812558 trnalys_c + 0.0760398364143866 trnamet_c + 0.114289649962229 trnaphe_c + 0.149974972042654 trnapro_c + 0.255601998781001 trnaser_c + 0.217278545237938 trnathr_c + 0.0153399263561257 trnatrp_c + 0.0762944062187949 trnatyr_c + 0.286922001834538 trnaval_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-1.22133333333333e-06
25aics_c
(S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate
-2.5e-05
2fe2s_c
[2Fe-2S] iron-sulfur cluster
-0.000248
4fe4s_c
[4Fe-4S] iron-sulfur cluster
-0.000223
5mthf_c
5-Methyltetrahydrofolate
-0.000251158
accoa_c
Acetyl-CoA
-0.00326733653519446
adp_c
ADP C10H12N5O10P2
-0.000118894666666667
adprib_c
ADPribose C15H21N5O14P2
-4.07473333333333e-05
aicar_c
5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide
-4.28646666666667e-05
air_c
5-amino-1-(5-phospho-D-ribosyl)imidazole
-0.423632460532057
alatrna_c
L-Alanyl-tRNA(Ala)
-0.000911653304681671
amp_c
AMP C10H12N5O7P
-0.0918089359638714
argtrna_c
L-Arginyl-tRNA(Arg)
-0.197581628673794
asntrna_c
L-Asparaginyl-tRNA(Asn)
-0.218521086057564
asptrna_c
L-Aspartyl-tRNA(Asp)
-0.145790969008564
atp_c
ATP C10H12N5O13P3
-2e-06
btn_c
Biotin
-0.000832021974702629
cdp_c
CDP C9H12N3O11P2
-0.000223
chor_c
Chorismate
-0.004952
cl_c
Chloride
-0.000600864756467935
cmp_c
CMP C9H12N3O8P
-0.000221609784860776
coa_c
Coenzyme A
-0.066756388073929
ctp_c
CTP C9H12N3O14P3
-0.0209808370736605
cystrna_c
L-Cysteinyl-tRNA(Cys)
-1.20343333333333e-05
dadp_c
DADP C10H12N5O9P2
-4.61533333333333e-06
damp_c
DAMP C10H12N5O6P
-0.0322157042402594
datp_c
DATP C10H12N5O12P3
-1.35283333333333e-05
dcdp_c
DCDP C9H12N3O10P2
-1.673e-06
dcmp_c
DCMP C9H12N3O7P
-0.0172721560415041
dctp_c
DCTP C9H12N3O13P3
-0.000109048
dgdp_c
DGDP C10H12N5O10P2
-1e-06
dgmp_c
DGMP C10H12N5O7P
-0.0149650961239284
dgtp_c
DGTP C10H12N5O13P3
-4.23666666666667e-06
didp_c
DIDP; 2'-deoxyinosine-5'-diphosphate(3-)
-7.46e-07
dimp_c
DIMP C10H12N4O7P
-8.7751e-05
dtdp_c
DTDP C10H13N2O11P2
-0.0342907422630927
dttp_c
DTTP C10H13N2O14P3
-1.9085e-05
e4p_c
D-Erythrose 4-phosphate
-0.0107578645424233
f6p_c
D-Fructose 6-phosphate
-4.36053333333333e-05
fad_c
Flavin adenine dinucleotide oxidized
-0.00302503809888867
fdp_c
D-Fructose 1,6-bisphosphate
-0.006388
fe2_c
Fe2+ mitochondria
-0.007428
fe3_c
Iron (Fe3+)
-1.53733333333333e-05
fmn_c
FMN C17H19N4O9P
-0.00656510781868268
g6p_c
D-Glucose 6-phosphate
-1.01913333333333e-05
gar_c
N1-(5-Phospho-D-ribosyl)glycinamide
-0.000140997483565739
gdp_c
GDP C10H12N5O11P2
-0.126949548237883
glntrna_c
L-Glutaminyl-tRNA(Gln)
-0.236004222544405
glutrna_c
L-Glutamyl-tRNA(Glu)
-0.489884461815628
glytrna_c
Glycyl-tRNA(Gly)
-1e-06
gmp_c
GMP C10H12N5O8P
-0.0717413508690766
gtp_c
GTP C10H12N5O14P3
-0.000223
hemeO_c
Heme O C49H56FeN4O5
-0.0602470691980932
histrna_c
L-Histidyl-tRNA(His)
-0.265788828846867
iletrna_c
L-Isoleucyl-tRNA(Ile)
-0.00082713918858427
imp_c
IMP C10H11N4O8P
-0.18569
k_c
Potassium
-0.296137663627832
leutrna_c
L-Leucyl-tRNA(Leu)
-3e-06
lipopb_c
Lipoate (protein bound)
-0.233693369812558
lystrna_c
L-Lysine-tRNA (Lys)
-0.000143479333333333
malcoa_c
Malonyl CoA C24H33N7O19P3S
-0.0760398364143866
mettrna_c
L-Methionyl-tRNA (Met)
-0.008253
mg2_c
Magnesium
-0.000658
mn2_c
Manganese
-7e-06
mobd_c
Molybdate
-1.9895
na1_c
Sodium
-1.09973333333333e-05
nad_c
Nicotinamide adenine dinucleotide
-1.83333333333333e-07
nadh_c
Nicotinamide adenine dinucleotide - reduced
-3.29583333333333e-05
nadp_c
Nicotinamide adenine dinucleotide phosphate
-4.0375e-05
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.012379
nh4_c
Ammonium
-0.000223
pheme_c
Protoheme C34H30FeN4O4
-0.114289649962229
phetrna_c
L-Phenylalanyl-tRNA(Phe)
-2.39666666666667e-07
pram_c
5-Phospho-beta-D-ribosylamine
-0.149974972042654
protrna_c
L-Prolyl-tRNA(Pro)
-0.000192739333333333
prpp_c
5-Phospho-alpha-D-ribose 1-diphosphate
-0.03327
ptrc_c
Putrescine
-1.6527e-05
rbflvrd_c
Reduced riboflavin
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.000204374
s17bp_c
Sedoheptulose 1,7-bisphosphate
-4.1923e-05
s7p_c
Sedoheptulose 7-phosphate
-0.255601998781001
sertrna_c
L-Seryl-tRNA(Ser)
-0.004126
so4_c
Sulfate
-5.23233333333333e-06
succoa_c
Succinyl-CoA
-0.000223
thm_c
Thiamin
-0.000223
thmpp_c
Thiamine diphosphate
-0.217278545237938
thrtrna_c
L-Threonyl-tRNA(Thr)
0.423632460532057
trnaala_c
TRNA(Ala)
0.0918089359638714
trnaarg_c
TRNA(Arg)
0.197581628673794
trnaasn_c
TRNA Asn C10H17O10PR2
0.218521086057564
trnaasp_c
TRNA(Asp)
0.0209808370736605
trnacys_c
TRNA(Cys)
0.362953770782288
trnaglu_c
TRNA (Glu)
0.489884461815628
trnagly_c
TRNA(Gly)
0.0602470691980932
trnahis_c
TRNA(His)
0.265788828846867
trnaile_c
TRNA(Ile)
0.296137663627832
trnaleu_c
TRNA(Leu)
0.233693369812558
trnalys_c
TRNA(Lys)
0.0760398364143866
trnamet_c
TRNA(Met)
0.114289649962229
trnaphe_c
TRNA(Phe)
0.149974972042654
trnapro_c
TRNA(Pro)
0.255601998781001
trnaser_c
TRNA(Ser)
0.217278545237938
trnathr_c
TRNA(Thr)
0.0153399263561257
trnatrp_c
TRNA(Trp)
0.0762944062187949
trnatyr_c
TRNA(Tyr)
0.286922001834538
trnaval_c
TRNA(Val)
-0.0153399263561257
trptrna_c
L-Tryptophanyl-tRNA(Trp)
-0.0762944062187949
tyrtrna_c
L-Tyrosyl-tRNA(Tyr)
-0.000386460666666667
uacgam_c
UDP-N-acetyl-D-glucosamine
-1.23583333333333e-05
uacmam_c
UDP-N-acetyl-D-mannosamine
-1.07153333333333e-05
uama_c
UDP-N-acetylmuramoyl-L-alanine
-6.32866666666667e-06
uamag_c
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
-0.000181107333333333
uamr_c
UDP-N-acetylmuramate
-0.000231240333333333
udcpp_c
Undecaprenyl phosphate
-0.000930858135601723
udp_c
UDP C9H11N2O12P2
-0.000177274
udpg_c
UDPglucose
-0.00249409889766259
ump_c
UMP C9H11N2O9P
-0.118289050266337
utp_c
UTP C9H11N2O15P3
-0.286922001834538
valtrna_c
L-Valyl-tRNA(Val)
-0.000324
zn2_c
Zinc
-0.000440383666666667
cdpglyc_c
CDPglycerol C12H19N3O13P2
-0.00493631043718319
mqn7_c
Menaquinone 7 C46H64O2
-0.00262322198280426
3g12dgr_MRSA_c
1,2-diacyl-3-O-(beta-D-glucopyranosyl-(1->6)-O-beta-D-glucopyranosyl)-sn-glycerol
-0.00114134054982119
LTA_MRSA_w
Lipoteichoic acid
-0.00874624310832839
WTA40rPG_w
Peptidoglycan bound wall teichoic acid
-0.00831380373939899
WTA40raPG_w
Peptidoglycan bound wall teichoic acid (alanine charged)
-0.00762327685818712
WTA40rgPG_w
Peptidoglycan bound wall teichoic acid (N-acetyl-glucosamine charged)
-0.00286984353246381
clpn_MRSA_c
Cardiolipin (MRSA); bisphosphatidylglycerol
-0.0109370901007626
dag_MRSA_c
1,2-diacyl-sn-glycerol 3-phosphate (MRSA)
-0.0212090493892501
pg_MRSA_c
L-1-phosphatidyl-sn-glycerol (MRSA)
-0.00236326444528039
pglys_MRSA_c
2-O-D-alanyl-1-O-phosphatidylglycerolysine
-7.73333333333333e-08
uamagl_c
UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-L-lysine
-1.3655e-05
uamaglaa_c
UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine

BIOMASS_WT_lumped in BiGG models:


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External database links

Old identifiers

    BIOMASS_WT_lumped