Reaction: BIOMASS__2

Pseudoreaction ?

Descriptive name:

Model:

iEK1008

Reaction:

0.2352 14glucan_c + 0.23018 acgam1p_c + 0.40596 ala__L_c + 0.0347 amet_c + 0.12042 arg__L_c + 0.047699 asn__L_c + 0.12031 asp__L_c + 60.0 atp_c + 0.25095 cmp_c + 0.0132 coa_c + 0.0168 ctp_c + 0.022 cys__L_c + 0.003492 damp_c + 0.0102 datp_c + 0.0194 dctp_c + 0.0194 dgtp_c + 0.0102 dttp_c + 0.0129 fad_c + 0.0008 fe2_c + 0.0008 fe3_c + 0.0222 fmn_c + 0.0001 gdpmann_c + 0.16315 glc__D_c + 0.05812 gln__L_c + 0.090007 glu__L_c + 0.33581 gly_c + 0.0184 glyc_c + 0.2352 glycogen_c + 0.24365 gmp_c + 0.0168 gtp_c + 60.0 h2o_c + 0.23515 hdca_c + 0.01094 hdcea_c + 0.0008 hemeO_c + 0.074917 his__L_c + 0.087731 ile__L_c + 0.20471 leu__L_c + 0.03909 lys__L_c + 0.095065 man_c + 0.034889 met__L_c + 0.0118 mql8_c + 0.0152 nad_c + 0.0136 nadp_c + 0.034837 ocdca_c + 0.009849 ocdcea_c + 0.00724 pa160_c + 0.004061 pe160_c + 0.006487 pg160_c + 0.048102 phe__L_c + 0.13803 pro__L_c + 0.021723 rib__D_c + 0.2326 ser__L_c + 0.0008 sheme_c + 0.0008 thf_c + 0.0008 thmpp_c + 0.13571 thr__L_c + 0.00797 tre_c + 0.006491 tre6p_c + 0.020124 trp__L_c + 0.012193 ttdca_c + 0.031756 tyr__L_c + 0.000986 uaagmda_c + 0.002793 uamr_c + 0.0088 utp_c + 0.20583 val__L_c + 0.058352 hexc_c + 0.0008 fdxox_c + 0.0008 fdxrd_c + 0.0008 hemeA_c + 0.006474 tres_c + 0.001176 tat_c + 0.001008 uaaGgla_c + 0.01885 peptido_TB2_c + 0.001008 uaaAgla_c + 0.01885 peptido_TB1_c + 0.006453 phdca_c + 0.00581 pg190_c + 0.00613 pg160190_c + 0.001251 pat_c + 0.0131 msh_c + 0.001274 Ac2PIM2_c + 0.001488 Ac1PIM2_c + 0.001681 Ac1PIM1_c + 0.015676 arach_c + 0.001106 tmha1_c + 0.006407 pa190190_c + 0.0011 tmha2_c + 0.006798 pa160190_c + 0.001104 tmha3_c + 0.000977 ugagmda_c + 0.005859 clpn160190_c + 0.000731 arabinanagalfragund_c + 0.00784 mbhn_c + 0.001266 PIM5_c + 0.001154 PIM6_c + 0.001335 Ac1PIM3_c + 0.001211 Ac1PIM4_c + 0.095802 mocdca_c + 0.001573 PIM3_c + 0.001403 PIM4_c + 0.001097 tmha4_c + 0.0064 hphthiocnylcoa_c + 0.0295 c78mycolatepp_c → 60.0 adp_c + 60.0 h_c + 60.0 pi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.2352
14glucan_c
1,4-alpha-D-glucan
-0.23018
acgam1p_c
N-Acetyl-D-glucosamine 1-phosphate
60.0
adp_c
ADP C10H12N5O10P2
-0.40596
ala__L_c
L-Alanine
-0.0347
amet_c
S-Adenosyl-L-methionine
-0.12042
arg__L_c
L-Arginine
-0.047699
asn__L_c
L-Asparagine
-0.12031
asp__L_c
L-Aspartate
-60.0
atp_c
ATP C10H12N5O13P3
-0.25095
cmp_c
CMP C9H12N3O8P
-0.0132
coa_c
Coenzyme A
-0.0168
ctp_c
CTP C9H12N3O14P3
-0.022
cys__L_c
L-Cysteine
-0.003492
damp_c
DAMP C10H12N5O6P
-0.0102
datp_c
DATP C10H12N5O12P3
-0.0194
dctp_c
DCTP C9H12N3O13P3
-0.0194
dgtp_c
DGTP C10H12N5O13P3
-0.0102
dttp_c
DTTP C10H13N2O14P3
-0.0129
fad_c
Flavin adenine dinucleotide oxidized
-0.0008
fe2_c
Fe2+ mitochondria
-0.0008
fe3_c
Iron (Fe3+)
-0.0222
fmn_c
FMN C17H19N4O9P
-0.0001
gdpmann_c
GDP-D-mannose
-0.16315
glc__D_c
D-Glucose
-0.05812
gln__L_c
L-Glutamine
-0.090007
glu__L_c
L-Glutamate
-0.33581
gly_c
Glycine
-0.0184
glyc_c
Glycerol
-0.2352
glycogen_c
Glycogen C6H10O5
-0.24365
gmp_c
GMP C10H12N5O8P
-0.0168
gtp_c
GTP C10H12N5O14P3
60.0
h_c
H+
-60.0
h2o_c
H2O H2O
-0.23515
hdca_c
Hexadecanoate (n-C16:0)
-0.01094
hdcea_c
Hexadecenoate (n-C16:1)
-0.0008
hemeO_c
Heme O C49H56FeN4O5
-0.074917
his__L_c
L-Histidine
-0.087731
ile__L_c
L-Isoleucine
-0.20471
leu__L_c
L-Leucine
-0.03909
lys__L_c
L-Lysine
-0.095065
man_c
D-Mannose
-0.034889
met__L_c
L-Methionine
-0.0118
mql8_c
Menaquinol 8
-0.0152
nad_c
Nicotinamide adenine dinucleotide
-0.0136
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.034837
ocdca_c
Octadecanoate (n-C18:0)
-0.009849
ocdcea_c
Octadecenoate (n-C18:1)
-0.00724
pa160_c
1,2-dihexadecanoyl-sn-glycerol 3-phosphate
-0.004061
pe160_c
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.006487
pg160_c
Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
-0.048102
phe__L_c
L-Phenylalanine
60.0
pi_c
Phosphate
-0.13803
pro__L_c
L-Proline
-0.021723
rib__D_c
D-Ribose
-0.2326
ser__L_c
L-Serine
-0.0008
sheme_c
Siroheme C42H36FeN4O16
-0.0008
thf_c
5,6,7,8-Tetrahydrofolate
-0.0008
thmpp_c
Thiamine diphosphate
-0.13571
thr__L_c
L-Threonine
-0.00797
tre_c
Trehalose
-0.006491
tre6p_c
Alpha,alpha'-Trehalose 6-phosphate
-0.020124
trp__L_c
L-Tryptophan
-0.012193
ttdca_c
Tetradecanoate (n-C14:0)
-0.031756
tyr__L_c
L-Tyrosine
-0.000986
uaagmda_c
Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala
-0.002793
uamr_c
UDP-N-acetylmuramate
-0.0088
utp_c
UTP C9H11N2O15P3
-0.20583
val__L_c
L-Valine
-0.058352
hexc_c
Hexacosanoate n C260 C26H51O2
-0.0008
fdxox_c
Oxidized ferredoxin
-0.0008
fdxrd_c
Reduced ferredoxin
-0.0008
hemeA_c
Heme A C49H55FeN4O6
-0.006474
tres_c
Trehalose 2 sulfate
-0.001176
tat_c
Tetra-acyl trehalose
-0.001008
uaaGgla_c
Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine
-0.01885
peptido_TB2_c
Peptidoglycan subunit (for Mycobacterium tuberculosis)
-0.001008
uaaAgla_c
Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine
-0.01885
peptido_TB1_c
Peptidoglycan subunit (for Mycobacterium tuberculosis)
-0.006453
phdca_c
Phenol palmitic acid
-0.00581
pg190_c
Phosphatidylglycerol (dimethylstearoyl, C19:0)
-0.00613
pg160190_c
Phosphatidylglycerol (hexadecanoyl, methylstearoyl)
-0.001251
pat_c
Penta-acyl trehalose
-0.0131
msh_c
Mycothiol (reduced)
-0.001274
Ac2PIM2_c
Di-acyl phosphatidylinositol mannoside di-mannose (tuberculosis)
-0.001488
Ac1PIM2_c
Acyl phosphatidylinositol mannoside di-mannose (tuberculosis)
-0.001681
Ac1PIM1_c
Acyl phosphatidylinositol mannoside (tuberculosis)
-0.015676
arach_c
Arachidic acid
-0.001106
tmha1_c
Tetramycolyl hexaarabinoside (tdm1 + tdm2 +tre) (Mtb)
-0.006407
pa190190_c
1,2-sn-glycerol 3-phosphate
-0.0011
tmha2_c
Tetramycolyl hexaarabinoside (tdm1 + tdm3 + tre) (Mtb)
-0.006798
pa160190_c
1,2-sn-glycerol 3-phosphate
-0.001104
tmha3_c
Tetramycolyl hexaarabinoside (tdm1 + tdm4 + tre) (Mtb)
-0.000977
ugagmda_c
Undecaprenyl-diphospho-N-glycolylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala
-0.005859
clpn160190_c
Cardiolipin (dihexadecanoyl, dimethylstearoyl)
-0.000731
arabinanagalfragund_c
Arabinan-arabinofuranose-galactofuranosyl(30)-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate (M tb)
-0.00784
mbhn_c
Methyl behenic acid
-0.001266
PIM5_c
Phosphatidylinositol mannoside penta-mannose (tuberculosis)
-0.001154
PIM6_c
Phosphatidylinositol mannoside hexa-mannose (tuberculosis)
-0.001335
Ac1PIM3_c
Acyl phosphatidylinositol mannoside tri-mannose (tuberculosis)
-0.001211
Ac1PIM4_c
Acyl phosphatidylinositol mannoside tetra-mannose (tuberculosis)
-0.095802
mocdca_c
10-methylstearic acid
-0.001573
PIM3_c
Phosphatidylinositol mannoside tri-mannose (tuberculosis)
-0.001403
PIM4_c
Phosphatidylinositol mannoside tetra-mannose (tuberculosis)
-0.001097
tmha4_c
Tetramycolyl hexaarabinoside (tdm2 + tdm3 + tre) (Mtb)
-0.0064
hphthiocnylcoa_c
Hydroxyphthioceranoyl-CoA
-0.0295
c78mycolatepp_c
C78-alpha-mycolate-PP

Default bounds:

(0.0, 1000.0)

Objective coefficient:

1.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:

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Universal reaction ?

External database links

Old identifiers

    biomass

BIOMASS__2 in other models