Reaction: BIOMASS__4

Pseudoreaction ?

Descriptive name:

Biomass

Model:

iAM_Pb448

Reaction:

0.209 ala__L_c + 0.194 arg__L_c + 0.287 asn__L_c + 0.217 asp__L_c + 32.369 atp_c + 0.0001 coa_c + 0.071 ctp_c + 0.073 cys__L_c + 0.015 datp_c + 0.011 dctp_c + 0.011 dgtp_c + 0.015 dttp_c + 0.0001 fad_c + 0.0001 gdpfuc_c + 0.0001 gdpmann_c + 0.13 gln__L_c + 0.306 glu__L_c + 0.262 gly_c + 0.0001 gthrd_c + 0.085 gtp_c + 32.369 h2o_c + 0.108 his__L_c + 0.222 ile__L_c + 0.326 leu__L_c + 0.358 lys__L_c + 0.08 met__L_c + 0.0001 nad_c + 0.0001 nadp_c + 0.169 phe__L_c + 0.0001 pheme_c + 0.143 pro__L_c + 0.044 ptrc_c + 0.0001 pydx5p_c + 0.32 ser__L_c + 0.027 spmd_c + 0.0001 thmpp_c + 0.171 thr__L_c + 0.025 trp__L_c + 0.159 tyr__L_c + 0.072 utp_c + 0.208 val__L_c + 0.0001 5thf_c + 0.0001 q8h2_m + 0.00463 sphymyln_pf_18_1_16_0_g + 1.4e-05 tag_pf_18_0_18_1_16_0_c + 0.010863 pchol_pf_16_0_18_0_c + 0.010863 pchol_pf_16_0_20_4_c + 0.006549 pe_pf_20_4_20_4_c + 0.0032 sphymyln_pf_18_1_18_0_g + 0.003171 sphymyln_pf_18_1_24_0_g + 4e-05 tag_pf_16_0_18_0_18_0_c + 1.4e-05 tag_pf_18_0_18_0_18_1_c + 3.2e-05 tag_pf_18_1_18_2_18_2_c + 0.000572 pail_pf_16_0_16_0_c + 0.000572 pail_pf_16_0_18_0_c + 0.000572 pail_pf_16_0_18_1_c + 0.000772 pail_pf_18_0_18_0_c + 0.000772 pail_pf_18_0_18_1_c + 0.001741 pail_pf_18_1_18_1_c + 0.010863 pchol_pf_16_0_16_0_c + 0.010863 pchol_pf_16_0_18_1_c + 0.010863 pchol_pf_16_0_18_2_c + 0.017954 pchol_pf_18_1_18_1_c + 0.017954 pchol_pf_18_1_18_2_c + 0.015775 pchol_pf_18_2_18_2_c + 0.006724 pe_pf_16_0_16_0_c + 0.006724 pe_pf_16_0_18_1_c + 0.006724 pe_pf_16_0_18_2_c + 0.007206 pe_pf_18_1_18_1_c + 0.007206 pe_pf_18_1_18_2_c + 0.008869 pe_pf_18_2_18_2_c + 0.001543 ps_pf_18_0_18_1_c + 0.001543 ps_pf_18_0_20_4_c + 0.001231 ps_pf_18_1_18_1_c + 0.001231 ps_pf_18_1_20_4_c + 0.001451 ps_pf_20_4_20_4_c + 0.01 clpn_pf_16_0_18_1_16_0_18_1_m + 0.0001 lipopb_m + 0.133 mem3gacpail_pf_18_0_18_1_16_0_r → 32.369 adp_c + 32.369 h_c + 32.369 pi_c

Metabolites:

Stoichiometry
BiGG ID
Name
32.369
adp_c
ADP C10H12N5O10P2
-0.209
ala__L_c
L-Alanine
-0.194
arg__L_c
L-Arginine
-0.287
asn__L_c
L-Asparagine
-0.217
asp__L_c
L-Aspartate
-32.369
atp_c
ATP C10H12N5O13P3
-0.0001
coa_c
Coenzyme A
-0.071
ctp_c
CTP C9H12N3O14P3
-0.073
cys__L_c
L-Cysteine
-0.015
datp_c
DATP C10H12N5O12P3
-0.011
dctp_c
DCTP C9H12N3O13P3
-0.011
dgtp_c
DGTP C10H12N5O13P3
-0.015
dttp_c
DTTP C10H13N2O14P3
-0.0001
fad_c
Flavin adenine dinucleotide oxidized
-0.0001
gdpfuc_c
GDP-L-fucose
-0.0001
gdpmann_c
GDP-D-mannose
-0.13
gln__L_c
L-Glutamine
-0.306
glu__L_c
L-Glutamate
-0.262
gly_c
Glycine
-0.0001
gthrd_c
Reduced glutathione
-0.085
gtp_c
GTP C10H12N5O14P3
32.369
h_c
H+
-32.369
h2o_c
H2O H2O
-0.108
his__L_c
L-Histidine
-0.222
ile__L_c
L-Isoleucine
-0.326
leu__L_c
L-Leucine
-0.358
lys__L_c
L-Lysine
-0.08
met__L_c
L-Methionine
-0.0001
nad_c
Nicotinamide adenine dinucleotide
-0.0001
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.169
phe__L_c
L-Phenylalanine
-0.0001
pheme_c
Protoheme C34H30FeN4O4
32.369
pi_c
Phosphate
-0.143
pro__L_c
L-Proline
-0.044
ptrc_c
Putrescine
-0.0001
pydx5p_c
Pyridoxal 5'-phosphate
-0.32
ser__L_c
L-Serine
-0.027
spmd_c
Spermidine
-0.0001
thmpp_c
Thiamine diphosphate
-0.171
thr__L_c
L-Threonine
-0.025
trp__L_c
L-Tryptophan
-0.159
tyr__L_c
L-Tyrosine
-0.072
utp_c
UTP C9H11N2O15P3
-0.208
val__L_c
L-Valine
-0.0001
5thf_c
Pentaglutamyl folate (THF)
-0.0001
q8h2_m
Ubiquinol-8
-0.00463
sphymyln_pf_18_1_16_0_g
N-(hexadecanoyl)-sphing-4-enine-1-phosphocholine
-1.4e-05
tag_pf_18_0_18_1_16_0_c
Triacylglycerol(18:0/18:1(9Z)/16:0) or 1-palmitoyl-2-stearoyl-3-oleoyl-glycerol
-0.010863
pchol_pf_16_0_18_0_c
Phosphatidyl choline(plasmodium,C16:0,C18:0)
-0.010863
pchol_pf_16_0_20_4_c
Phosphatidyl choline(plasmodium,C16:0,C20:4)
-0.006549
pe_pf_20_4_20_4_c
Phosphatidyl ethanolamine(plasmodium,C20:4,C20:4)
-0.0032
sphymyln_pf_18_1_18_0_g
N-(octadecanoyl)-sphing-4-enine-1-phosphocholine
-0.003171
sphymyln_pf_18_1_24_0_g
N-(tetracosanoyl)-sphing-4-enine-1-phosphocholine
-4e-05
tag_pf_16_0_18_0_18_0_c
1-hexadecanoyl-2,3-dioctadecanoyl-sn-glycerol
-1.4e-05
tag_pf_18_0_18_0_18_1_c
1,2-dioctadecanoyl-3-(9Z-octadecenoyl)-sn-glycerol
-3.2e-05
tag_pf_18_1_18_2_18_2_c
1-(9Z-octadecenoyl)-2,3-di-(9Z,12Z-octadecadienoyl)-sn-glycerol
-0.000572
pail_pf_16_0_16_0_c
Phosphatidyl inositol(plasmodium,C16:0,C16:0)
-0.000572
pail_pf_16_0_18_0_c
Phosphatidyl inositol(plasmodium,C16:0,C18:0)
-0.000572
pail_pf_16_0_18_1_c
Phosphatidyl inositol(plasmodium,C16:0,C18:1)
-0.000772
pail_pf_18_0_18_0_c
Phosphatidyl inositol(plasmodium,C18:0,C18:0)
-0.000772
pail_pf_18_0_18_1_c
Phosphatidyl inositol(plasmodium,C18:0,C18:1)
-0.001741
pail_pf_18_1_18_1_c
Phosphatidyl inositol(plasmodium,C18:1,C18:1)
-0.010863
pchol_pf_16_0_16_0_c
Phosphatidyl choline(plasmodium,C16:0,C16:0)
-0.010863
pchol_pf_16_0_18_1_c
Phosphatidyl choline(plasmodium,C16:0,C18:1)
-0.010863
pchol_pf_16_0_18_2_c
Phosphatidyl choline(plasmodium,C16:0,C18:2)
-0.017954
pchol_pf_18_1_18_1_c
Phosphatidyl choline(plasmodium,C18:1,C18:1)
-0.017954
pchol_pf_18_1_18_2_c
Phosphatidyl choline(plasmodium,C18:1,C18:2)
-0.015775
pchol_pf_18_2_18_2_c
Phosphatidyl choline(plasmodium,C18:2,C18:2)
-0.006724
pe_pf_16_0_16_0_c
Phosphatidyl ethanolamine(plasmodium,C16:0,C16:0)
-0.006724
pe_pf_16_0_18_1_c
Phosphatidyl ethanolamine(plasmodium,C16:0,C18:1)
-0.006724
pe_pf_16_0_18_2_c
Phosphatidyl ethanolamine(plasmodium,C16:0,C18:2)
-0.007206
pe_pf_18_1_18_1_c
Phosphatidyl ethanolamine(plasmodium,C18:1,C18:1)
-0.007206
pe_pf_18_1_18_2_c
Phosphatidyl ethanolamine(plasmodium,C18:1,C18:2)
-0.008869
pe_pf_18_2_18_2_c
Phosphatidyl ethanolamine(plasmodium,C18:2,C18:2)
-0.001543
ps_pf_18_0_18_1_c
Phosphatidyl serine(plasmodium,C18:0,C18:1)
-0.001543
ps_pf_18_0_20_4_c
Phosphatidyl serine(plasmodium,C18:0,C20:4)
-0.001231
ps_pf_18_1_18_1_c
Phosphatidyl serine(plasmodium,C18:1,C18:1)
-0.001231
ps_pf_18_1_20_4_c
Phosphatidyl serine(plasmodium,C18:1,C20:4)
-0.001451
ps_pf_20_4_20_4_c
Phosphatidyl serine(plasmodium,C20:4,C20:4)
-0.01
clpn_pf_16_0_18_1_16_0_18_1_m
Cardiolipin(plasmodium)
-0.0001
lipopb_m
Lipoate (protein bound)
-0.133
mem3gacpail_pf_18_0_18_1_16_0_r
Mannosyl,phosphoethanolaminyl,trimannosyl-glucosaminyl-acylphosphatidyl inositol(plasmodium,C18:0,C18:1,C16:0)

Default bounds:

(0.0, 1000000.0)

Objective coefficient:

1.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:

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Universal reaction ?

External database links

Old identifiers

    biomass

BIOMASS__4 in other models