Reaction: BIOMASS_Ec_iAF1260_core_59p81M

Pseudoreaction ?

Descriptive name:

E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate

Model:

iAF1260b

Reaction:

0.000223 10fthf_c + 0.000223 2ohph_c + 0.5137 ala__L_c + 0.000223 amet_c + 0.2958 arg__L_c + 0.2411 asn__L_c + 0.2411 asp__L_c + 59.984 atp_c + 0.004737 ca2_c + 0.004737 cl_c + 0.000576 coa_c + 0.003158 cobalt2_c + 0.1335 ctp_c + 0.003158 cu2_c + 0.09158 cys__L_c + 0.02617 datp_c + 0.02702 dctp_c + 0.02702 dgtp_c + 0.02617 dttp_c + 0.000223 fad_c + 0.007106 fe2_c + 0.007106 fe3_c + 0.2632 gln__L_c + 0.2632 glu__L_c + 0.6126 gly_c + 0.2151 gtp_c + 54.462 h2o_c + 0.09474 his__L_c + 0.2905 ile__L_c + 0.1776 k_c + 0.4505 leu__L_c + 0.3432 lys__L_c + 0.1537 met__L_c + 0.007895 mg2_c + 0.000223 mlthf_c + 0.003158 mn2_c + 0.003158 mobd_c + 0.001831 nad_c + 0.000447 nadp_c + 0.011843 nh4_c + 0.02233 pe160_c + 0.02632 pe161_c + 0.1759 phe__L_c + 0.000223 pheme_c + 0.2211 pro__L_c + 0.000223 pydx5p_c + 0.000223 ribflv_c + 0.2158 ser__L_c + 0.000223 sheme_c + 0.003948 so4_c + 0.000223 thf_c + 0.000223 thmpp_c + 0.2537 thr__L_c + 0.05684 trp__L_c + 0.1379 tyr__L_c + 5.5e-05 udcpdp_c + 0.1441 utp_c + 0.4232 val__L_c + 0.003158 zn2_c + 0.01945 kdo2lipid4_e + 0.01389 murein5px4p_p + 0.04148 pe160_p + 0.04889 pe161_p → 59.81 adp_c + 59.81 h_c + 59.806 pi_c + 0.7739 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-0.000223
2ohph_c
2-Octaprenyl-6-hydroxyphenol
59.81
adp_c
ADP C10H12N5O10P2
-0.5137
ala__L_c
L-Alanine
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.2958
arg__L_c
L-Arginine
-0.2411
asn__L_c
L-Asparagine
-0.2411
asp__L_c
L-Aspartate
-59.984
atp_c
ATP C10H12N5O13P3
-0.004737
ca2_c
Calcium
-0.004737
cl_c
Chloride
-0.000576
coa_c
Coenzyme A
-0.003158
cobalt2_c
Co2+
-0.1335
ctp_c
CTP C9H12N3O14P3
-0.003158
cu2_c
Copper
-0.09158
cys__L_c
L-Cysteine
-0.02617
datp_c
DATP C10H12N5O12P3
-0.02702
dctp_c
DCTP C9H12N3O13P3
-0.02702
dgtp_c
DGTP C10H12N5O13P3
-0.02617
dttp_c
DTTP C10H13N2O14P3
-0.000223
fad_c
Flavin adenine dinucleotide oxidized
-0.007106
fe2_c
Fe2+ mitochondria
-0.007106
fe3_c
Iron (Fe3+)
-0.2632
gln__L_c
L-Glutamine
-0.2632
glu__L_c
L-Glutamate
-0.6126
gly_c
Glycine
-0.2151
gtp_c
GTP C10H12N5O14P3
59.81
h_c
H+
-54.462
h2o_c
H2O H2O
-0.09474
his__L_c
L-Histidine
-0.2905
ile__L_c
L-Isoleucine
-0.1776
k_c
Potassium
-0.4505
leu__L_c
L-Leucine
-0.3432
lys__L_c
L-Lysine
-0.1537
met__L_c
L-Methionine
-0.007895
mg2_c
Magnesium
-0.000223
mlthf_c
5,10-Methylenetetrahydrofolate
-0.003158
mn2_c
Manganese
-0.003158
mobd_c
Molybdate
-0.001831
nad_c
Nicotinamide adenine dinucleotide
-0.000447
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.011843
nh4_c
Ammonium
-0.02233
pe160_c
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.02632
pe161_c
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.1759
phe__L_c
L-Phenylalanine
-0.000223
pheme_c
Protoheme C34H30FeN4O4
59.806
pi_c
Phosphate
0.7739
ppi_c
Diphosphate
-0.2211
pro__L_c
L-Proline
-0.000223
pydx5p_c
Pyridoxal 5'-phosphate
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.2158
ser__L_c
L-Serine
-0.000223
sheme_c
Siroheme C42H36FeN4O16
-0.003948
so4_c
Sulfate
-0.000223
thf_c
5,6,7,8-Tetrahydrofolate
-0.000223
thmpp_c
Thiamine diphosphate
-0.2537
thr__L_c
L-Threonine
-0.05684
trp__L_c
L-Tryptophan
-0.1379
tyr__L_c
L-Tyrosine
-5.5e-05
udcpdp_c
Undecaprenyl diphosphate
-0.1441
utp_c
UTP C9H11N2O15P3
-0.4232
val__L_c
L-Valine
-0.003158
zn2_c
Zinc
-0.01945
kdo2lipid4_e
KDO(2)-lipid IV(A)
-0.01389
murein5px4p_p
Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.04148
pe160_p
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.04889
pe161_p
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)

Default bounds:

(0.0, 999999.0)

Objective coefficient:

1.0

Subsystem:

Biomass and maintenance functions

Gene Reaction Rule:

Genes:


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Old identifiers

    Ec_biomass_iAF1260_core_59p81M

BIOMASS_Ec_iAF1260_core_59p81M in other models