Universal reaction: BIOMASS_Gm_GS15_WT_79p20M

Pseudoreaction ?

Descriptive name:

Geobacter metallireducens biomass objective function (iAF987) - WT - with 79.20 GAM estimate

Reaction:

0.000223 10fthf_c + 0.000223 2dmmql8_c + 2.5e-05 2fe2s_c + 0.000248 4fe4s_c + 0.000223 5mthf_c + 0.000279 accoa_c + 0.000223 adocbl_c + 0.49649 ala__L_c + 0.000223 amet_c + 0.28589 arg__L_c + 0.23298 asn__L_c + 0.23298 asp__L_c + 79.298747 atp_c + 0.000116 bmocogdp_c + 2e-06 btn_c + 0.004954 ca2_c + 0.000223 chor_c + 0.004954 cl_c + 0.000168 coa_c + 2.4e-05 cobalt2_c + 0.075407 ctp_c + 0.000675 cu2_c + 0.088513 cys__L_c + 0.032312 datp_c + 0.047392 dctp_c + 0.047392 dgtp_c + 0.032312 dttp_c + 0.000223 fad_c + 0.013822 fe2_c + 0.254349 gln__L_c + 0.254349 glu__L_c + 0.592125 gly_c + 0.185024 glycogen_c + 0.121489 gtp_c + 74.030609 h2o_c + 0.000223 hemeO_c + 0.091566 his__L_c + 0.2808 ile__L_c + 0.18579 k_c + 0.43545 leu__L_c + 0.33167 lys__L_c + 3.1e-05 malcoa_c + 0.14854 met__L_c + 0.008257 mg2_c + 0.000223 mlthf_c + 0.000658 mn2_c + 7e-06 mobd_c + 7e-06 mocogdp_c + 0.000223 mql8_c + 0.001787 nad_c + 4.5e-05 nadh_c + 0.000112 nadp_c + 0.000335 nadph_c + 0.012386 nh4_c + 0.000307 ni2_c + 0.005125 pe140_c + 0.015467 pe160_c + 0.022649 pe161_c + 0.002327 pe181_c + 0.002372 pg140_c + 0.007159 pg160_c + 0.010483 pg161_c + 0.000357 pg181_c + 0.179062 phe__L_c + 0.000223 pheme_c + 0.213653 pro__L_c + 0.030683 ptrc_c + 0.000223 pydx5p_c + 0.000223 ribflv_c + 0.208566 ser__L_c + 0.000223 sheme_c + 0.004129 so4_c + 0.00607 spmd_c + 9.8e-05 succoa_c + 0.000223 thf_c + 0.000223 thmpp_c + 0.245193 thr__L_c + 0.054939 trp__L_c + 0.13328 tyr__L_c + 5.5e-05 udcpdp_c + 0.081392 utp_c + 0.408993 val__L_c + 0.000325 zn2_c + 0.00122 clpn140_p + 0.003683 clpn160_p + 0.005393 clpn161_p + 0.000215 clpn181_p + 0.001614 murein3p3p_p + 0.000726 murein3px4p_p + 0.006457 murein4p4p_p + 0.006538 murein4px4p_p + 0.000807 murein4px4px4p_p + 0.013178 pe140_p + 0.039773 pe160_p + 0.058241 pe161_p + 0.000905 pe181_p + 0.002021 pg140_p + 0.006098 pg160_p + 0.00893 pg161_p + 0.000419 pg181_p + 0.013207 gm1lipa_e ⇌ 79.2 adp_c + 79.2 h_c + 79.195871 pi_c + 0.536443 ppi_c

Metabolites:

Stoichiometry
BiGG ID
Name
-0.000223
10fthf_c
10-Formyltetrahydrofolate
-0.000223
2dmmql8_c
2-Demethylmenaquinol 8
-2.5e-05
2fe2s_c
[2Fe-2S] iron-sulfur cluster
-0.000248
4fe4s_c
[4Fe-4S] iron-sulfur cluster
-0.000223
5mthf_c
5-Methyltetrahydrofolate
-0.000279
accoa_c
Acetyl-CoA
-0.000223
adocbl_c
Adenosylcobalamin
79.2
adp_c
ADP C10H12N5O10P2
-0.49649
ala__L_c
L-Alanine
-0.000223
amet_c
S-Adenosyl-L-methionine
-0.28589
arg__L_c
L-Arginine
-0.23298
asn__L_c
L-Asparagine
-0.23298
asp__L_c
L-Aspartate
-79.298747
atp_c
ATP C10H12N5O13P3
-0.000116
bmocogdp_c
Bis-molybdopterin guanine dinucleotide
-2e-06
btn_c
Biotin
-0.004954
ca2_c
Calcium
-0.000223
chor_c
Chorismate
-0.004954
cl_c
Chloride
-0.000168
coa_c
Coenzyme A
-2.4e-05
cobalt2_c
Co2+
-0.075407
ctp_c
CTP C9H12N3O14P3
-0.000675
cu2_c
Copper
-0.088513
cys__L_c
L-Cysteine
-0.032312
datp_c
DATP C10H12N5O12P3
-0.047392
dctp_c
DCTP C9H12N3O13P3
-0.047392
dgtp_c
DGTP C10H12N5O13P3
-0.032312
dttp_c
DTTP C10H13N2O14P3
-0.000223
fad_c
Flavin adenine dinucleotide oxidized
-0.013822
fe2_c
Fe2+ mitochondria
-0.254349
gln__L_c
L-Glutamine
-0.254349
glu__L_c
L-Glutamate
-0.592125
gly_c
Glycine
-0.185024
glycogen_c
Glycogen C6H10O5
-0.121489
gtp_c
GTP C10H12N5O14P3
79.2
h_c
H+
-74.030609
h2o_c
H2O H2O
-0.000223
hemeO_c
Heme O C49H56FeN4O5
-0.091566
his__L_c
L-Histidine
-0.2808
ile__L_c
L-Isoleucine
-0.18579
k_c
Potassium
-0.43545
leu__L_c
L-Leucine
-0.33167
lys__L_c
L-Lysine
-3.1e-05
malcoa_c
Malonyl CoA C24H33N7O19P3S
-0.14854
met__L_c
L-Methionine
-0.008257
mg2_c
Magnesium
-0.000223
mlthf_c
5,10-Methylenetetrahydrofolate
-0.000658
mn2_c
Manganese
-7e-06
mobd_c
Molybdate
-7e-06
mocogdp_c
Molybdopterin guanine dinucleotide
-0.000223
mql8_c
Menaquinol 8
-0.001787
nad_c
Nicotinamide adenine dinucleotide
-4.5e-05
nadh_c
Nicotinamide adenine dinucleotide - reduced
-0.000112
nadp_c
Nicotinamide adenine dinucleotide phosphate
-0.000335
nadph_c
Nicotinamide adenine dinucleotide phosphate - reduced
-0.012386
nh4_c
Ammonium
-0.000307
ni2_c
Nickel
-0.005125
pe140_c
Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)
-0.015467
pe160_c
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.022649
pe161_c
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.002327
pe181_c
Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)
-0.002372
pg140_c
Phosphatidylglycerol (ditetradecanoyl, n-C14:0)
-0.007159
pg160_c
Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
-0.010483
pg161_c
Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)
-0.000357
pg181_c
Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)
-0.179062
phe__L_c
L-Phenylalanine
-0.000223
pheme_c
Protoheme C34H30FeN4O4
79.195871
pi_c
Phosphate
0.536443
ppi_c
Diphosphate
-0.213653
pro__L_c
L-Proline
-0.030683
ptrc_c
Putrescine
-0.000223
pydx5p_c
Pyridoxal 5'-phosphate
-0.000223
ribflv_c
Riboflavin C17H20N4O6
-0.208566
ser__L_c
L-Serine
-0.000223
sheme_c
Siroheme C42H36FeN4O16
-0.004129
so4_c
Sulfate
-0.00607
spmd_c
Spermidine
-9.8e-05
succoa_c
Succinyl-CoA
-0.000223
thf_c
5,6,7,8-Tetrahydrofolate
-0.000223
thmpp_c
Thiamine diphosphate
-0.245193
thr__L_c
L-Threonine
-0.054939
trp__L_c
L-Tryptophan
-0.13328
tyr__L_c
L-Tyrosine
-5.5e-05
udcpdp_c
Undecaprenyl diphosphate
-0.081392
utp_c
UTP C9H11N2O15P3
-0.408993
val__L_c
L-Valine
-0.000325
zn2_c
Zinc
-0.00122
clpn140_p
Cardiolipin (tetratetradecanoyl, n-C14:0)
-0.003683
clpn160_p
Cardiolipin (tetrahexadecanoyl, n-C16:0)
-0.005393
clpn161_p
Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)
-0.000215
clpn181_p
Cardiolipin (tetraoctadec-11-enoyl, n-C18:1)
-0.001614
murein3p3p_p
Two linked disacharide tripeptide murein units (uncrosslinked, middle of chain)
-0.000726
murein3px4p_p
Two disacharide linked murein units, tripeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.006457
murein4p4p_p
Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)
-0.006538
murein4px4p_p
Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)
-0.000807
murein4px4px4p_p
Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)
-0.013178
pe140_p
Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)
-0.039773
pe160_p
Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)
-0.058241
pe161_p
Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)
-0.000905
pe181_p
Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)
-0.002021
pg140_p
Phosphatidylglycerol (ditetradecanoyl, n-C14:0)
-0.006098
pg160_p
Phosphatidylglycerol (dihexadecanoyl, n-C16:0)
-0.00893
pg161_p
Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)
-0.000419
pg181_p
Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)
-0.013207
gm1lipa_e
4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A (G. metallireducens, variant 1)

BIOMASS_Gm_GS15_WT_79p20M in BiGG models:

Organism
Model
Geobacter metallireducens GS-15
iAF987

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External database links

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Old identifiers

    Gm_biomass_GS15_WT_79p20M