Gene: SDY_3899

Descriptive name:

fadB

Model:

iSDY_1059

Position:

Left: 3629491 – Right: 3631680

Strand:

Plus

Chromosome:

CP000034.1

DNA Sequence

ATGCTTTACAAAGGCGACACCCTGTACCTTGACTGGCTGGAAGATGGCATTGCCGAACTGGTATTTGATGCCCCAAGTTCAGTTAATAAACTCGACACTGCGACCGTCGCCAGCCTCGGCGAGGCCATCGGCGTGCTGGAACAGCAATCAGATCTAAAAGGGCTGCTGCTGCGTTCGAACAAAGCAGCCTTTATCGTCGGTGCTGATATCACCGAATTTTTGTCCCTGTTCCTCGTTCCTGAAGAACAGTTAAGTCAGTGGCTGCACTTTGCCAATAGCGTGTTTAATCGCCTGGAAGATCTGCCGGTGCCGACCATTGCTGCCGTCAATGGCTATGCGCTGGGCGGTGGCTGCGAATGCGTGCTGGCGACCGATTACCGTCTGGCGACGCCGGATCTGCGCATCGGTCTGCCGGAAACCAAACTGGGCATCATGCCGGGCTTTGGCGGTTCTGTACGTATGCCACGTATGCTGGGCGCTGACAGTGCGCTGGAAATCATTGCCGCCGGTAAAGATGTCGGCGCGGATCAGGCGCTGAAAATCGGTCTGGTGGATGGCGTAGTCAAAGCAGAAAAACTGATTGAAGGGGCGATGGCGATTTTACGCCAGGCCATTAACGGCGACCTCGACTGGAAAGCGAAACGTCAGCCGAAGCTGGAACCGCTAAAACTGAGCAAGATTGAAGCTACCATGAGCTTCACCATCGCTAAAGGGATGGTCGCACAAACGGCGGGGAAACATTATCCGGCCCCCATCACCGCAGTAAAAACCATTGAAGCTGCGGCCCGTTTTGGTCGTGAAGAAGCTCTAAACCTGGAAAACAAAAGTTTTGTCCCGCTGGCGCATACCAACGAAGCTCGCGCACTGATCGGCATATTCCTTAACGATCAATATGTAAAAGGCAAAGCGAAGAAACTCACCAAAGACGTTGAAACCCCGAAACAGGCCGCTGTGCTGGGCGCAGGCATTATGGGCGGCGGCATCGCTTACCAGTCTGCGTGGAAAGGCGTGCCGGTTGTCATGAAAGATATCAACGACAAGTCGTTAACCCTCGGCATGACCGAAGCCGCGAAACTGCTGAACAAGCAGCTTGAGCGCGGCAAGATCGATGGTCTGAAACTGGCTGGCGTGATCTCTACAATCCACCCAACGCTCGACTACGCCGGGTTTGACCGCGTGGATGTTGTGGTAGAAGCGGTTGTCGAAAACCCGAAAGTGAAAAAAGCCGTACTGGCAGAAACCGAGCAGAAAGTACGCCCGGATACCGTGCTGGCGTCTAACACTTCAACCATTCCTATCAGCGAACTGGCCAACGCGCTGGAACGTCCGGAAAACTTCTGCGGGATGCACTTCTTTAACCCGGTCCACCGAATGCCGTTGGTGGAAATTATTCGCGGCGAGAAAAGCTCCGACGAAACTATTGCGAAAGTCGTCGCCTGGGCGAGCAAGATGGGTAAAACGCCGATTGTGGTTAACGATTGCCCCGGCTTCTTCGTCAACCGCGTGCTGTTCCCGTATTTCGCCGGTTTCAGCCAGTTGCTGCGCGACGGCGCGGATTTCCGCAAGATCGACAAAGTGATGGAAAAACAGTTTGGCTGGCCTATGGGTCCGGCATATCTACTGGACGTTGTGGGCATTGACACCGCGCATCACGCCCAGGCAGTCATGGCAGCGGGCTTCCCACAGCGGATGCAGAAAGATTATCGCGATGCCATCGACGCGCTGTTTGATGCCAACCGCTTTGGTCAGAAGAACGGCCTCGGTTTCTGGCATTATAAAGAAGACAGCAAAGGTAAGCCGAAGAAAGAAGAAGACGCCGCTGTTGACGACCTGCTGGCAGAAGTGAGCCAGCCGAAGCGCGATTTCAGCGAAGAAGAGATTATCGCCCGCATGATGATCCCGATGGTCAACGAAGTGGTGCGCTGTCTGGAAGAAGGCATTATCGCCACTCCGGCAGAAGCGGATATGGCGCTGGTCTACGGCCTGGGCTTCCCTCCGTTCCACGGCGGCGCGTTCCGCTGGCTGGACACCCTCGGCAGCGCAAAATACCTCGATATGGCACAGCAATATCAGCACCTCGGCCCGCTGTACGAAGTGCCGGAAGGTCTGCGTAATAAAGCGCGTCATAACGAACCGTACTATCCCCCGGTTGAGCCAGCCCGTCCGGTTGGCGACCTGAAAACGGCTTAA

Protein Sequence

MLYKGDTLYLDWLEDGIAELVFDAPSSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLIEGAMAILRQAINGDLDWKAKRQPKLEPLKLSKIEATMSFTIAKGMVAQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALIGIFLNDQYVKGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWHYKEDSKGKPKKEEDAAVDDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPARPVGDLKTA

Associated reactions:

BiGG ID
Name
Gene reaction rule
CTECOAI6
3-cis-2-trans-enoyl-CoA isomerase
SDY_3899
CTECOAI7
3-cis-2-trans-enoyl-CoA isomerase
SDY_3899
CTECOAI8
3-cis-2-trans-enoyl-CoA isomerase
SDY_3899
ECOAH1
3-hydroxyacyl-CoA dehydratase (3-hydroxybutanoyl-CoA)
SDY_3899 or SDY_2542
ECOAH2
3-hydroxyacyl-CoA dehydratase (3-hydroxyhexanoyl-CoA)
SDY_3899 or SDY_2542
ECOAH3
3-hydroxyacyl-CoA dehydratase (3-hydroxyoctanoyl-CoA)
SDY_3899 or SDY_2542
ECOAH4
3-hydroxyacyl-CoA dehydratase (3-hydroxydecanoyl-CoA)
SDY_3899 or SDY_2542
ECOAH5
3-hydroxyacyl-CoA dehydratase (3-hydroxydodecanoyl-CoA)
SDY_3899 or SDY_2542
ECOAH6
3-hydroxyacyl-CoA dehydratase (3-hydroxytetradecanoyl-CoA)
SDY_3899 or SDY_2542
ECOAH7
3-hydroxyacyl-CoA dehydratase (3-hydroxyhexadecanoyl-CoA)
SDY_3899 or SDY_2542
ECOAH8
3-hydroxyacyl-CoA dehydratase (3-hydroxyoctadecanoyl-CoA)
SDY_3899 or SDY_2542
HACD1
3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA)
SDY_3899 or SDY_2542
HACD2
3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)
SDY_3899 or SDY_2542
HACD3
3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)
SDY_3899 or SDY_2542
HACD4
3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)
SDY_3899 or SDY_2542
HACD5
3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)
SDY_3899 or SDY_2542
HACD6
3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA)
SDY_3899 or SDY_2542
HACD7
3-hydroxyacyl-CoA dehydrogenase (3-oxohexadecanoyl-CoA)
SDY_3899 or SDY_2542
HACD8
3-hydroxyacyl-CoA dehydrogenase (3-oxooctadecanoyl-CoA), peroxisomal
SDY_3899 or SDY_2542
HACD3i
3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)
SDY_2542 or SDY_3899
HACD2i
3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)
SDY_3899 or SDY_2542
HACD5i
3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)
SDY_3899 or SDY_2542
HACD4i
3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)
SDY_3899 or SDY_2542
HACD7i
3-hydroxyacyl-CoA dehydrogenase (3-oxohexadecanoyl-CoA)
SDY_3899 or SDY_2542
CTECOAI8
3-cis-2-trans-enoyl-CoA isomerase
SDY_3899
HACD1i
3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA)
SDY_3899 or SDY_2542
HACD8i
3-hydroxyacyl-CoA dehydrogenase (3-oxooctadecanoyl-CoA)
SDY_3899 or SDY_2542
HACD6i
3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA)
SDY_3899 or SDY_2542
CTECOAI7
3-cis-2-trans-enoyl-CoA isomerase
SDY_3899
CTECOAI6
3-cis-2-trans-enoyl-CoA isomerase
SDY_3899
DHACOAH
2,3-dehydroadipyl-CoA hydratase
SDY_3899 or SDY_2542

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External database links

Old identifiers

    SDY_3899

Latest BiGG Models publication:

King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models (2016) Nucleic Acids Research 44(D1):D515-D522. doi:10.1093/nar/gkv1049

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