Gene: deleted


Descriptive name:

Deleted

Model:

iEC1349_Crooks

Chromosome:

Gene is not mapped to a genome annotation.

Associated reactions:

BiGG ID
Name
Gene reaction rule
ACNAMtex
N-acetylneuraminate transport via diffusion (extracellular to periplasm)
deleted or ECOLC_RS14330 or ECOLC_RS07685
FHL
Formate-hydrogen lyase
(EcolC_3948 and (ECOLC_RS06420 and ECOLC_RS06415 and deleted and ECOLC_RS06405 and ECOLC_RS06400 and ECOLC_RS06395 and ECOLC_RS06390 and ECOLC_RS06385 and ECOLC_RS06380 and ECOLC_RS06375)) or (EcolC_3948 and (ECOLC_RS05295 and ECOLC_RS05290 and ECOLC_RS05285 and ECOLC_RS05280 and ECOLC_RS05275 and ECOLC_RS05270))
GLCNt2rpp
D-gluconate transport via proton symport, reversible (periplasm)
deleted or ECOLC_RS01485 or ECOLC_RS01590 or deleted
GLCptspp
D-glucose transport via PEP:Pyr PTS (periplasm)
(ECOLC_RS06760 and ECOLC_RS00105 and ECOLC_RS06770 and ECOLC_RS06765) or (ECOLC_RS06760 and ECOLC_RS13415 and ECOLC_RS06770 and ECOLC_RS06765) or (deleted and ECOLC_RS09750 and ECOLC_RS09745 and ECOLC_RS06770 and ECOLC_RS06765)
GNK
Gluconokinase
deleted or ECOLC_RS01480
H2Otex
H2O transport via diffusion (extracellular to periplasm)
s0001 or ECOLC_RS14190 or deleted or ECOLC_RS07685 or ECOLC_RS17950 or ECOLC_RS12355 or ECOLC_RS12200 or ECOLC_RS14330
HYD1pp
Hydrogenase (ubiquinone-8: 2 protons) (periplasm)
(ECOLC_RS14105 and deleted and ECOLC_RS14080) or (ECOLC_RS03720 and ECOLC_RS03715 and ECOLC_RS03710 and ECOLC_RS03705) or (ECOLC_RS05295 and ECOLC_RS05290 and ECOLC_RS05285 and ECOLC_RS05280 and ECOLC_RS05275 and ECOLC_RS05270)
HYD2pp
Hydrogenase (menaquinone8: 2 protons) (periplasm)
(ECOLC_RS14105 and deleted and ECOLC_RS14080) or (ECOLC_RS03720 and ECOLC_RS03715 and ECOLC_RS03710 and ECOLC_RS03705)
HYD3pp
Hydrogenase (Demethylmenaquinone-8: 2 protons) (periplasm)
(ECOLC_RS14105 and deleted and ECOLC_RS14080) or (ECOLC_RS03720 and ECOLC_RS03715 and ECOLC_RS03710 and ECOLC_RS03705)
Kt2pp
Potassium transport in via proton symport (periplasm)
(ECOLC_RS12500 and ECOLC_RS02230 and ECOLC_RS22450) or ECOLC_RS12735 or (ECOLC_RS12500 and ECOLC_RS02230 and deleted) or ECOLC_RS22945
OCBT
Ornithine carbamoyltransferase
ECOLC_RS20215 or deleted
PUNP3
Purine-nucleoside phosphorylase (Guanosine)
deleted or ECOLC_RS19725
PUNP4
Purine-nucleoside phosphorylase (Deoxyguanosine)
deleted or ECOLC_RS19725
PUNP5
Purine-nucleoside phosphorylase (Inosine)
deleted or ECOLC_RS19725
PUNP6
Purine-nucleoside phosphorylase (Deoxyinosine)
deleted or ECOLC_RS19725
RPE
Ribulose 5-phosphate 3-epimerase
deleted or ECOLC_RS01740

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External database links

Old identifiers

    deleted

Latest BiGG Models publication:

King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models (2016) Nucleic Acids Research 44(D1):D515-D522. doi:10.1093/nar/gkv1049


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